RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CPXM2Q8N436 756 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 NT5DC2Q9H857 520 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 AP1G1O43747 822 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 LCMT2O60294 686 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 SSTR4P31391 388 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 CLDN2P57739 230 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 HIST2H3PS2Q5TEC6 136 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 RNLSQ5VYX0 342 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 APOOLQ6UXV4 268 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF778Q96MU6 729 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ACPTQ9BZG2 426 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 GJA5P36382 358 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 P2RX1P51575 399 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 HSD11B1LQ7Z5J1 315 aa11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 UTP23Q9BRU9 249 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-204ENST00000389857 ARAFP10398 606 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 COX15Q7KZN9 410 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 BPIFB2Q8N4F0 458 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 C3orf49Q96BT1 292 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 FAM212BQ9NTI7 297 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 BABAM2Q9NXR7 383 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 LRIT1Q9P2V4 623 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 B3GAT1Q9P2W7 334 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 PGAP2Q9UHJ9 254 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 RAB19A4D1S5 217 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 TNFRSF10AO00220 468 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 IL1AP01583 271 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC10A3P09131 477 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 FCGR2AP12318 317 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 ACPPP15309 386 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SSR4P51571 173 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 GPR19Q15760 415 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MANEAQ5SRI9 462 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 RANBP10Q6VN20 620 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 NPSR1Q6W5P4 371 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SORBS1Q9BX66 1292 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 F6UZH7 168 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 HLA-DOBP13765 273 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC35A1P78382 337 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 BAXQ07812 192 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 IKZF1Q13422 519 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 VHLLQ6RSH7 139 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MFSD9Q8NBP5 474 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF384Q8TF68 577 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MOKQ9UQ07 419 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 NOSIPQ9Y314 301 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 H7C1Q1 480 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 FRS3O43559 492 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CDK4P11802 303 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MAOBP27338 520 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SNCAP37840 140 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CSNK1DP48730 415 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 UBE2KP61086 200 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CAMK2BQ13554 666 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 POU4F3Q15319 338 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CREB3L2Q70SY1 520 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 HTR3DQ70Z44 454 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 VRK2Q86Y07 508 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 C3orf58Q8NDZ4 430 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SMAP2Q8WU79 429 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CHTF18Q8WVB6 975 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SLAMF7Q9NQ25 335 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SEMA4GQ9NTN9 838 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 IL4RP24394 825 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 OPRD1P41143 372 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MTCP1P56278 107 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 NFATC4Q14934 902 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 RBMS2Q15434 407 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC6A18Q96N87 628 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 MTHFD2P13995 350 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 HIST1H1TP22492 207 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CD38P28907 300 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 PRLHRP49683 370 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 GIMAP1Q8WWP7 306 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 SLC30A3Q99726 388 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 CLSTN3Q9BQT9 956 aa11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 KLF16Q9BXK1 252 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-204ENST00000389857 BET1O15155 118 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ZNF264O43296 627 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LIPCP11150 499 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GPX3P22352 226 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ECI1P42126 302 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GSK3AP49840 483 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CDONQ4KMG0 1287 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CLMPQ9H6B4 373 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 KCNIP2Q9NS61 270 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ANKRD12Q6UB98 2062 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 GYPBP06028 91 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 RPS17P08708 135 aaKnown RBP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 RAP2BP61225 183 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ZP2Q05996 745 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 CTSL3PQ5NE16 218 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ARNT2Q9HBZ2 717 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 TAAR2Q9P1P5 351 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 ZCWPW2A0A1B0GU75 182 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 LRP5LA4QPB2 252 aa11.93□□□□□ -0.5
CCDC88C-204ENST00000389857 OR6C65A6NJZ3 312 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms