RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TMEM72A0PK05 275 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 DPM1O60762 260 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 C1SP09871 688 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 CPMP14384 443 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 RPS25P62851 125 aaKnown RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 GPR19Q15760 415 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 WBP2NLQ6ICG8 309 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 CPEB2Q7Z5Q1 589 aaKnown RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 PPP1R3BQ86XI6 285 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 RBMXL3Q8N7X1 1067 aaKnown RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 INSM2Q96T92 566 aaPredicted RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 SLC6A20Q9NP91 592 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 DHCR7Q9UBM7 475 aaKnown RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 NENFQ9UMX5 172 aa12.78□□□□□ -0.36
COL4A1-201ENST00000375820 TMEM184BQ9Y519 407 aaPredicted RBP12.78□□□□□ -0.36
COL4A1-201ENST00000375820 LCMT2O60294 686 aaKnown RBP12.77□□□□□ -0.36
COL4A1-201ENST00000375820 EGFP01133 1207 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 CCL11P51671 97 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 CLINT1Q14677 625 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 PRICKLE2Q7Z3G6 844 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 OR5L1Q8NGL2 311 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 OR1J4Q8NGS1 313 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 LINC01599Q8WXQ3 324 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 CASD1Q96PB1 797 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 TTLL8A6PVC2 850 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 RFXAPO00287 272 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF623O75123 536 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 EDDM3BP56851 147 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 SLC36A2Q495M3 483 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 TMEM244Q5VVB8 128 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 RNLSQ5VYX0 342 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 OR13C9Q8NGT0 318 aa12.77□□□□□ -0.36
COL4A1-201ENST00000375820 METTL17Q9H7H0 456 aaPredicted RBP12.77□□□□□ -0.36
COL4A1-201ENST00000375820 SIGLEC6O43699 453 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 GLSO94925 669 aaPredicted RBP12.77□□□□□ -0.37
COL4A1-201ENST00000375820 B3GALT4O96024 378 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 SLC10A3P09131 477 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 MAKP20794 623 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 CXCL12P48061 93 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 NDUFA6P56556 154 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 EDDM3AQ14507 147 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 OVCH1Q7RTY7 1134 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 BHLHE23Q8NDY6 225 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 KATNB1Q9BVA0 655 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 C1QTNF6Q9BXI9 259 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 KLF16Q9BXK1 252 aaPredicted RBP12.77□□□□□ -0.37
COL4A1-201ENST00000375820 CNTNAP3Q9BZ76 1288 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 SELENOIQ9C0D9 397 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 PLEKHM1Q9Y4G2 1056 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 D6RAR5 112 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 CTDSP2O14595 271 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 HOXA9P31269 272 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 TNFSF8P32971 234 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 PPT1P50897 306 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 BRICD5Q6PL45 260 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 FAM111BQ6SJ93 734 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 ADGRG5Q8IZF4 528 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 FAM213BQ8TBF2 198 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 NOSIPQ9Y314 301 aaKnown RBP12.77□□□□□ -0.37
COL4A1-201ENST00000375820 C3P01024 1663 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 H0YGG7 62 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 DVL1O14640 695 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 CD6P30203 668 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 DVL1P1P54792 670 aaPredicted RBP12.77□□□□□ -0.37
COL4A1-201ENST00000375820 KIR2DS3Q14952 304 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 DNAJC22Q8N4W6 341 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 MUCL1Q96DR8 90 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 OCSTAMPQ9BR26 566 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 PARP12Q9H0J9 701 aaKnown RBP12.77□□□□□ -0.37
COL4A1-201ENST00000375820 PPA2Q9H2U2 334 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 SDHAF2Q9NX18 166 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 GNG12Q9UBI6 72 aa12.77□□□□□ -0.37
COL4A1-201ENST00000375820 P2RY10O00398 339 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 BCAT2O15382 392 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 ANXA7P20073 488 aaKnown RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 PRKACBP22694 351 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 NFYBP25208 207 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF140P52738 457 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 PEA15Q15121 130 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 SLC5A12Q1EHB4 618 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 ATPAF1Q5TC12 328 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 RABL2AQ9UBK7 228 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 RABL2BQ9UNT1 228 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 CACNA1FO60840 1977 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 TNFRSF10AO00220 468 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 GAPDHSO14556 408 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 SGCEO43556 437 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 HIST1H1TP22492 207 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 GSCP56915 257 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 C15orf39Q6ZRI6 1047 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 RPL3LQ92901 407 aaKnown RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 HIPK2Q9H2X6 1198 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 PCYT1BQ9Y5K3 369 aaPredicted RBP12.76□□□□□ -0.37
COL4A1-201ENST00000375820 AIPO00170 330 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 ADAM12O43184 909 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 FZD7O75084 574 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 SEC14L2O76054 403 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 IVDP26440 423 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 RAB40BQ12829 278 aa12.76□□□□□ -0.37
COL4A1-201ENST00000375820 HNRNPA1L2Q32P51 320 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms