RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 CDS1Q92903 461 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 ZIC5Q96T25 663 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 EXOSC3Q9NQT5 275 aaKnown RBP11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 ACOD1A6NK06 481 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 HTR2CP28335 458 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 LAP3P28838 519 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 GATMP50440 423 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 CLDN20P56880 219 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 ELAVL3Q14576 367 aaKnown RBP11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 AANATQ16613 207 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 SLC22A6Q4U2R8 563 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 CHADLQ6NUI6 762 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 C17orf107Q6ZR85 190 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 KANSL1Q7Z3B3 1105 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 PNPLA1Q8N8W4 532 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 NPLOC4Q8TAT6 608 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 GAREM1Q9H706 876 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 LRIT2A6NDA9 550 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 PAPLNO95428 1278 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 NAT1P18440 290 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 GDI1P31150 447 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 MRPS34P82930 218 aaKnown RBP11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 ARHGAP19Q14CB8 494 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 CLRN3Q8NCR9 226 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 DOK4Q8TEW6 326 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 SGK3Q96BR1 496 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 GABARAPL1Q9H0R8 117 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 ELOVL3Q9HB03 270 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 SLC6A20Q9NP91 592 aa11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 EXO1Q9UQ84 846 aaKnown RBP11.87□□□□□ -0.51
SYNCRIP-201ENST00000355238 GABRR1P24046 479 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NFYBP25208 207 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 EXOSC2Q13868 293 aaKnown RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SYPL1Q16563 259 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 CTSL3PQ5NE16 218 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 FIGLAQ6QHK4 219 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 MBOAT4Q96T53 435 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 PDE7BQ9NP56 450 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NOX4Q9NPH5 578 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SLC45A1Q9Y2W3 748 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ARGFXA6NJG6 315 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 GABARAPH6UMI1 98 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 HOXB2P14652 356 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ZNF44P15621 663 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 EFNA3P52797 238 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SERTAD2Q14140 314 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 HEPHL1Q6MZM0 1159 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 MAMDC4Q6UXC1 1216 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 VASH1Q7L8A9 365 aaPredicted RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 TECPR1Q7Z6L1 1165 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 VRK2Q86Y07 508 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ZNF439Q8NDP4 499 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NPRL2Q8WTW4 380 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SDSLQ96GA7 329 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NEURL2Q9BR09 285 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 TRIM77I1YAP6 450 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 FOXE1O00358 373 aaPredicted RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 MT-ND4LP03901 98 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ETV5P41161 510 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ECI1P42126 302 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 JAG1P78504 1218 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 B3GLCTQ6Y288 498 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 MBOAT2Q6ZWT7 520 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 TSTD1Q8NFU3 115 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NIPSNAP1Q9BPW8 284 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SPNS1Q9H2V7 528 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 CORINQ9Y5Q5 1042 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 FAM221BA6H8Z2 402 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 A6NLC8 198 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ELAVL4P26378 380 aaKnown RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 COX15Q7KZN9 410 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 LMX1AQ8TE12 382 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 UBTD2Q8WUN7 234 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 UPRTQ96BW1 309 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 CDCA4Q9BXL8 241 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 DEFB126Q9BYW3 111 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 DUSP21Q9H596 190 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ZNF286AQ9HBT8 521 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 RAB9BQ9NP90 201 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 STEAP1Q9UHE8 339 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 PRELID3BQ9Y3B1 194 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 ROBO1Q9Y6N7 1651 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 GNB3P16520 340 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 THBS3P49746 956 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SNTB1Q13884 538 aaKnown RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 MSMO1Q15800 293 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 EXOSC6Q5RKV6 272 aaKnown RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 SAXO2Q658L1 398 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 KCTD11Q693B1 232 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 CPNE4Q96A23 557 aaPredicted RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 RAB3CQ96E17 227 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 UHRF2Q96PU4 802 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 OR10A5Q9H207 317 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 OR10A2Q9H208 303 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 NDRG4Q9ULP0 352 aaKnown RBP11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 IGKV6D-21A0A0A0MT36 114 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 TMEM269A0A1B0GVZ9 245 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 CYTIPO60759 359 aa11.86□□□□□ -0.51
SYNCRIP-201ENST00000355238 HLA-HP01893 362 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms