RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 RAB40ALP0C0E4 278 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 HOXA6P31267 233 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 NKPD1Q17RQ9 610 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 MNTQ99583 582 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 CHST11Q9NPF2 352 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 DECR2Q9NUI1 292 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 KLHL13Q9P2N7 655 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 HMGN4O00479 90 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 TIMM8AO60220 97 aaPredicted RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 PLOD3O60568 738 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 SNAP29O95721 258 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 NR4A1P22736 598 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 CFL1P23528 166 aaKnown RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 IL12AP29459 219 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 SOX3P41225 446 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PPP1CAP62136 330 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 RPS18P62269 152 aaKnown RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 VASNQ6EMK4 673 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 DPY19L2P2Q6ZN68 376 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 GDF7Q7Z4P5 450 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 OR9K2Q8NGE7 335 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 TMEM203Q969S6 136 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 SEMA4CQ9C0C4 833 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 OR51B6Q9H340 312 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 OBP2BQ9NPH6 170 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 FBXL3Q9UKT7 428 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ISPDA4D126 451 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 AGAP14A8MT82 685 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 HSPA12AO43301 675 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PIGAP37287 484 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 SOX2P48431 317 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 KEAP1Q14145 624 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PRAMEF17Q5VTA0 474 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 TSPYL5Q86VY4 417 aaPredicted RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 DGCR14Q96DF8 476 aaKnown RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 SAP130Q9H0E3 1048 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 INPP5EQ9NRR6 644 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 FBP2O00757 339 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 BMP2P12643 396 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 CEACAM1P13688 526 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 NID1P14543 1247 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ZIC1Q15915 447 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PLPP5Q8NEB5 264 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 MICU1Q9BPX6 476 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 KCNIP1Q9NZI2 227 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PRAMEF27A3QJZ7 478 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 UPK1AO00322 258 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ACP2P11117 423 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 POU3F4P49335 361 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 E2F2Q14209 437 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ZNF385BQ569K4 471 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ZNF773Q6PK81 442 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 CPOQ8IVL8 374 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 OR13C2Q8NGS9 318 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 GATAD2BQ8WXI9 593 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 ACOT12Q8WYK0 555 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 SLC19A3Q9BZV2 496 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 OLAHQ9NV23 265 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 FBXO9Q9UK97 447 aaPredicted RBP9.34□□□□□ -0.91
USP54-201ENST00000339859 PLEKHA6Q9Y2H5 1048 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 GPR52Q9Y2T5 361 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 PATJQ8NI35 1801 aa9.34□□□□□ -0.91
USP54-201ENST00000339859 FAM171A2A8MVW0 826 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 F13BP05160 661 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 FRKP42685 505 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 SLC35D2Q76EJ3 337 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 TRAPPC6BQ86SZ2 158 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 CNIH3Q8TBE1 160 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 DHRS1Q96LJ7 313 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 DNAJB11Q9UBS4 358 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ASB4Q9Y574 426 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 WRBO00258 174 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ETHE1O95571 254 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 EFEMP2O95967 443 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 HOXB3P14651 431 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 GPX2P18283 190 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 TBXA2RP21731 343 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 GALNSP34059 522 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 RNF165Q6ZSG1 346 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 MAML2Q8IZL2 1156 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 TMEM163Q8TC26 289 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 S100A16Q96FQ6 103 aaKnown RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 CLEC4MQ9H2X3 399 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 ABCB10Q9NRK6 738 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 VNN3Q9NY84 501 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 DVL2O14641 736 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 SELEP16581 610 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 PYCR1P32322 319 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 GABARAPL2P60520 117 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 NKAPLQ5M9Q1 402 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZNF425Q6IV72 752 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 CGB2Q6NT52 195 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZNF813Q6ZN06 617 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 OR8K3Q8NH51 312 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 OR2V1Q8NHB1 315 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZMYND19Q96E35 227 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 LIN37Q96GY3 246 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 ZNF845Q96IR2 970 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 ZC3H10Q96K80 434 aaKnown RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 MED17Q9NVC6 651 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms