RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CHI3L1P36222 383 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 OR3A4PP47883 348 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 AIF1P55008 147 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 NDPQ00604 133 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 GBE1Q04446 702 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 RAB40BQ12829 278 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ELAVL3Q14576 367 aaKnown RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 TPSAB1Q15661 275 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF79Q15937 498 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 AANATQ16613 207 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 KYAT1Q16773 422 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 LRRC36Q1X8D7 754 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 TIGITQ495A1 244 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CFAP221Q4G0U5 840 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 FILIP1LQ4L180 1135 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 TPGS2Q68CL5 300 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 C16orf62Q7Z3J2 963 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 PKD1L3Q7Z443 1732 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CTAGE6Q86UF2 777 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 SKA3Q8IX90 412 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 LINC01006Q8NI28 216 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF564Q8TBZ8 553 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 PNPT1Q8TCS8 783 aaKnown RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 RAET1EQ8TD07 263 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 SPRYD4Q8WW59 207 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 RLN3Q8WXF3 142 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 LRRIQ1Q96JM4 1722 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 SENP8Q96LD8 212 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF184Q99676 751 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ALG12Q9BV10 488 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 GON7Q9BXV9 100 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CAPS2Q9BXY5 557 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 GCOM2Q9BZD3 368 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF385DQ9H6B1 395 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 NANSQ9NR45 359 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 PAK1IP1Q9NWT1 392 aaPredicted RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 ONECUT1Q9UBC0 465 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 CLEC4AQ9UMR7 237 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 MRPS33Q9Y291 106 aaKnown RBP2.38□□□□□ -2.03
HMGB1-201ENST00000326004 KIF16BQ96L93 1317 aa2.38□□□□□ -2.03
HMGB1-201ENST00000326004 BRD4O60885 1362 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 CEP152O94986 1710 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 LTBP1Q14766 1721 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 KIAA1107Q9UPP5 1409 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 MBLAC1A4D2B0 266 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 H3BMQ9 156 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SNNO75324 88 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 NEBLO76041 1014 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 F10P00742 488 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 H2BFMP0C1H6 154 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 HNF1AP20823 631 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 NT5EP21589 574 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 CD80P33681 288 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 PEX19P40855 299 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 AP3M2P53677 418 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 CBX1P83916 185 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 ZNF45Q02386 682 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SELPLGQ14242 412 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SLC5A12Q1EHB4 618 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 EOGTQ5NDL2 527 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 LIPNQ5VXI9 398 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 WSCD1Q658N2 575 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 BLOC1S2Q6QNY1 142 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SCARA5Q6ZMJ2 495 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 TAS2R42Q7RTR8 314 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 HSD17B13Q7Z5P4 300 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 TMEM179BQ7Z7N9 219 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SLC22A9Q8IVM8 553 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 CEND1Q8N111 149 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 LINC01561Q8N1V8 128 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 CLDN19Q8N6F1 224 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 OR2L5Q8NG80 312 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 OR10A7Q8NGE5 316 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 OR8J1Q8NGP2 316 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 OR9A1PQ8NGU1 263 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SETD7Q8WTS6 366 aaKnown RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 ANKRD49Q8WVL7 239 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 FBXO32Q969P5 355 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 NEIL2Q969S2 332 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 C16orf74Q96GX8 76 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SLC41A3Q96GZ6 507 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 NOL4LQ96MY1 436 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 IL4I1Q96RQ9 567 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 MCHR1Q99705 422 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 SLC6A7Q99884 636 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 NICN1Q9BSH3 213 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 PTGES2Q9H7Z7 377 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 ISG20L2Q9H9L3 353 aaKnown RBP2.37□□□□□ -2.03
HMGB1-201ENST00000326004 IL17CQ9P0M4 197 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 DCDC2Q9UHG0 476 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 ABCG2Q9UNQ0 655 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 OR10H1Q9Y4A9 318 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 MAD1L1Q9Y6D9 718 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 LRRC37A3O60309 1634 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 FRMPD3Q5JV73 1810 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 DUOX2Q9NRD8 1548 aa2.37□□□□□ -2.03
HMGB1-201ENST00000326004 LAMB4A4D0S4 1761 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ZFYVE9O95405 1425 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 ERBINQ96RT1 1412 aa2.36□□□□□ -2.03
HMGB1-201ENST00000326004 PHRF1Q9P1Y6 1649 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms