RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 POLR3GO15318 223 aaPredicted RBP17.2■□□□□ 0.34
LIME1-201ENST00000309546 PGM3O95394 542 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 DANCRP0C864 163 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 NCF2P19878 526 aaPredicted RBP17.2■□□□□ 0.34
LIME1-201ENST00000309546 CDH11P55287 796 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 H3F3AP84243 136 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 BNIP2Q12982 314 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 CEACAM7Q14002 265 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 OR7A5Q15622 319 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 OTUD3Q5T2D3 398 aaPredicted RBP17.2■□□□□ 0.34
LIME1-201ENST00000309546 RNF220Q5VTB9 566 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 C9orf135Q5VTT2 229 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 P2RY8Q86VZ1 359 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 LRRC8CQ8TDW0 803 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 GTF2H4Q92759 462 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 TRIM2Q9C040 744 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 ADAM19Q9H013 955 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 TCF7L2Q9NQB0 619 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 THUMPD1Q9NXG2 353 aaKnown RBP17.2■□□□□ 0.34
LIME1-201ENST00000309546 TAS2R16Q9NYV7 291 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 UPB1Q9UBR1 384 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 MALT1Q9UDY8 824 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 PCDHB14Q9Y5E9 798 aa17.2■□□□□ 0.34
LIME1-201ENST00000309546 A0A0G2JPF8 293 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 HNRNPCL2B2RXH8 293 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 HNRNPCL3B7ZW38 293 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 HNRNPCL1O60812 293 aaKnown RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 AKR7A3O95154 331 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 GPIP06744 558 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 THBS1P07996 1170 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 NUDT7P0C024 238 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 HNRNPCL4P0DMR1 293 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 ACAA2P42765 397 aaKnown RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 ZNF83P51522 516 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 MAP2K6P52564 334 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 FOXG1P55316 489 aaPredicted RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 VEZF1Q14119 521 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 WBP2NLQ6ICG8 309 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 PAQR6Q6TCH4 344 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 SSX8Q7RTT4 187 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 PIAS4Q8N2W9 510 aaPredicted RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 CLIP4Q8N3C7 705 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 TRMT61AQ96FX7 289 aaKnown RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 C7orf26Q96N11 449 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 TAPBPLQ9BX59 468 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 PAIP1Q9H074 479 aaKnown RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 ALG2Q9H553 416 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 SLCO1B3Q9NPD5 702 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 CISD1Q9NZ45 108 aaKnown RBP17.19■□□□□ 0.34
LIME1-201ENST00000309546 ZNF232Q9UNY5 417 aa17.19■□□□□ 0.34
LIME1-201ENST00000309546 LIPT2A6NK58 231 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 SHISA9B4DS77 424 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 CLIC1O00299 241 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 NR5A2O00482 541 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 ITGA5P08648 1049 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 PRG2P13727 222 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 SLC17A1Q14916 467 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 RGNQ15493 299 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 PGGHGQ32M88 737 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 ZNF311Q5JNZ3 666 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 SERPINA11Q86U17 422 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 GPAT4Q86UL3 456 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 GOLGA6L1Q8N7Z2 621 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 TMEM99Q8N816 258 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 MAL2Q969L2 176 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 EBF4Q9BQW3 602 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 SPATA9Q9BWV2 254 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 RAD21L1Q9H4I0 556 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 ARMC7Q9H6L4 198 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 PARPBPQ9NWS1 579 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 ADPRHL2Q9NX46 363 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 POU2F3Q9UKI9 436 aa17.18■□□□□ 0.34
LIME1-201ENST00000309546 NIPBLQ6KC79 2804 aaeCLIP17.17■□□□□ 0.34
LIME1-201ENST00000309546 C5orf58C9J3I9 102 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 M0R1B8 84 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 OVOL3O00110 214 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 FRS3O43559 492 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 PTNP21246 168 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 PCSK6P29122 969 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 SPOCK1Q08629 439 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 CLEC12BQ2HXU8 276 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 TSPO2Q5TGU0 170 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 SLC22A25Q6T423 547 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 KLHL17Q6TDP4 642 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 TMEM108Q6UXF1 575 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 OR9K2Q8NGE7 335 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 DYDC1Q8WWB3 177 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 C1QTNF6Q9BXI9 259 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 SLC7A10Q9NS82 523 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 FAIMQ9NVQ4 179 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 CCDC167Q9P0B6 97 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 CHST2Q9Y4C5 530 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 SLC25A15Q9Y619 301 aa17.17■□□□□ 0.34
LIME1-201ENST00000309546 A0A096LPI6 279 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 AQP7P3A6NL99 342 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 A8MVM7 634 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 IDH3AP50213 366 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 HOXC5Q00444 222 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 FADDQ13158 208 aa17.16■□□□□ 0.34
LIME1-201ENST00000309546 TNK1Q13470 666 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms