RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 LSM2Q9Y333 95 aaKnown RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 TRANK1O15050 2925 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 CNOT1A5YKK6 2376 aaKnown RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 TRBV23-1A0A0A0MS06 115 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 URADA6NGE7 173 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 ZNF879B4DU55 563 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 F5H5P2 479 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 NDUFS4O43181 175 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 SEC14L5O43304 696 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 SNRPBP14678 240 aaKnown RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 PDZK1IP1Q13113 114 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 FZD2Q14332 565 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 LTB4RQ15722 352 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 NDUFA9Q16795 377 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 NHLRC3Q5JS37 347 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 VASNQ6EMK4 673 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 ESPNLQ6ZVH7 1005 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 OR56A3Q8NH54 315 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 OR51V1Q9H2C8 321 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 CYSLTR2Q9NS75 346 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 CCL27Q9Y4X3 112 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 MYLKQ15746 1914 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 F5H0A9 414 aaPredicted RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 J3QLW9 94 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 ZNF19P17023 458 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 SNRPEP62304 92 aaKnown RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 MAP4K2Q12851 820 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 GPR18Q14330 331 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 FAM180BQ6P0A1 224 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 SFXN4Q6P4A7 337 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 LCTLQ6UWM7 567 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 APOOLQ6UXV4 268 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 CBLN2Q8IUK8 224 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 ZNF740Q8NDX6 193 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 RNASE11Q8TAA1 199 aaKnown RBP10.09□□□□□ -0.79
LSM3-201ENST00000306024 ABHD1Q96SE0 405 aa10.09□□□□□ -0.79
LSM3-201ENST00000306024 TMEM129A0AVI4 362 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 GPR31O00270 319 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 FLRT2O43155 660 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ERI3O43414 337 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 LILRB5O75023 590 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 HTR3BO95264 441 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 S100A8P05109 93 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 GIPP09681 153 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 UCHL1P09936 223 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 NPPBP16860 134 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ZNF10P21506 573 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 HBA1P69905 142 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 SORDQ00796 357 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 OCLNQ16625 522 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 GRHL2Q6ISB3 625 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 OAFQ86UD1 273 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 CDH26Q8IXH8 852 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 BPIFCQ8NFQ6 507 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 TMEM121BQ9BXQ6 578 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 POLDIP3Q9BY77 421 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 SLC25A19Q9HC21 320 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 POT1Q9NUX5 634 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 MIOXQ9UGB7 285 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 PLEKHA6Q9Y2H5 1048 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ARHGEF17Q96PE2 2063 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 MCRIP1C9JLW8 97 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 DPM1O60762 260 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ERAL1O75616 437 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 CDC123O75794 336 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 KLK1P06870 262 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ZNF35P13682 527 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 PTNP21246 168 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 RPL3P39023 403 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 RAD52P43351 418 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 SLC6A12P48065 614 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 PRDX1Q06830 199 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 DMWDQ09019 674 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 USF2Q15853 346 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 SERPINA12Q8IW75 414 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 LNX2Q8N448 690 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 OR8J2Q8NGG1 315 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 OR4C15Q8NGM1 316 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 CLDN23Q96B33 292 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ZNF251Q9BRH9 671 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 TCEAL7Q9BRU2 100 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 TTTY10Q9BZA0 68 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 IL20RAQ9UHF4 553 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 BTNL2Q9UIR0 455 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 URB1O60287 2271 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 LRIT2A6NDA9 550 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 DNASE2O00115 360 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 UBL3O95164 117 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 HOXC4P09017 264 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 CXCL2P19875 107 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ANXA7P20073 488 aaKnown RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 GSTM3P21266 225 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 FGF9P31371 208 aaPredicted RBP10.08□□□□□ -0.8
LSM3-201ENST00000306024 MVDP53602 400 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 RAB2AP61019 212 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 HSPB3Q12988 150 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 TRIM61Q5EBN2 209 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 BEX5Q5H9J7 111 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 ACSM5Q6NUN0 579 aa10.08□□□□□ -0.8
LSM3-201ENST00000306024 H3F3CQ6NXT2 135 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms