RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GAS2L1Q99501 681 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 MTERF1Q99551 399 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 KCNJ15Q99712 375 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ALG12Q9BV10 488 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 GMPR2Q9P2T1 348 aaKnown RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 ZNF107Q9UII5 783 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 TP53TG5Q9Y2B4 290 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 SPO11Q9Y5K1 396 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 ETV7Q9Y603 341 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 V9GYH0 126 aa5.99□□□□□ -1.45
VPS35-201ENST00000299138 COL11A2P13942 1736 aaPredicted RBP5.99□□□□□ -1.45
VPS35-201ENST00000299138 LILRB3O75022 631 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 DIRAS3O95661 229 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 C6P13671 934 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CST5P28325 142 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 FRKP42685 505 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 GABRA2P47869 451 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LIMS1P48059 325 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RPS27AP62979 156 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 UBA52P62987 128 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 LASP1Q14847 261 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 TESK1Q15569 626 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 INPP5JQ15735 1006 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 PCGF3Q3KNV8 242 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PYCR3Q53H96 274 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 THEM4Q5T1C6 240 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CNIH2Q6PI25 160 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ESPNLQ6ZVH7 1005 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TMCO2Q7Z6W1 182 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 EIF4E3Q8N5X7 224 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZFP41Q8N8Y5 198 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ANKK1Q8NFD2 765 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR1M1Q8NGA1 313 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR5AR1Q8NGP9 310 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR10K1Q8NGX5 313 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR56A3Q8NH54 315 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 BRIX1Q8TDN6 353 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 RBPMSQ93062 196 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 RBMXL1Q96E39 390 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 P2RY13Q9BPV8 354 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 NKX6-2Q9C056 277 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 HHATLQ9HCP6 504 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CYSLTR2Q9NS75 346 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ACER3Q9NUN7 267 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 DOCK1Q14185 1865 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PIGBOS1A0A0B4J2F0 54 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CASTOR2A6NHX0 329 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PHYHO14832 338 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 MPPED1O15442 326 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SNAI1O95863 264 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 ETFAP13804 333 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 DDCP20711 480 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CPT2P23786 658 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PRDX3P30048 256 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 GATMP50440 423 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 GBX1Q14549 363 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ZNF684Q5T5D7 378 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SUSD1Q6UWL2 747 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR4K5Q8NGD3 323 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR5A2Q8NGI9 324 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR5H2Q8NGV7 314 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PHYHIPLQ96FC7 376 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 HHIPL1Q96JK4 782 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 CLSTN3Q9BQT9 956 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SLC25A32Q9H2D1 315 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LSM2Q9Y333 95 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 H3BQ06 376 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 RAB29O14966 203 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR2T1O43869 369 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR2C1O95371 312 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PLGP00747 810 aaPredicted RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 HRGP04196 525 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 MGAT3Q09327 533 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PLGLAQ15195 96 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LINC01559Q495D7 138 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 FAM171A1Q5VUB5 890 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LRRTM1Q86UE6 522 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 FRMD1Q8N878 549 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 DBF4BQ8NFT6 615 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR5AK3PQ8NH89 298 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SCARB1Q8WTV0 552 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 EDAQ92838 391 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 MOCOSQ96EN8 888 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 UHRF2Q96PU4 802 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 TM6SF2Q9BZW4 377 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR52A5Q9H2C5 316 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 C1GALT1Q9NS00 363 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ARID2Q68CP9 1835 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 MEIKINA0A087WXM9 373 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 SLC38A8A6NNN8 435 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 URODP06132 367 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 ALPPL2P10696 532 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 PPP3CBP16298 524 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 FBLP22087 321 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 SLC6A1P30531 599 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 RPS19P39019 145 aaKnown RBP5.98□□□□□ -1.45
VPS35-201ENST00000299138 CDONQ4KMG0 1287 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 LRRTM3Q86VH5 581 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR2T33Q8NG76 320 aa5.98□□□□□ -1.45
VPS35-201ENST00000299138 OR51G2Q8NGK0 314 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms