RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF587Q96SQ5 575 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 NIT2Q9NQR4 276 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 PRSS44E7EML9 344 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SIX6O95475 246 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CPNE6O95741 557 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 NME2P22392 152 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SHMT2P34897 504 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SLC9A3R2Q15599 337 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 C1orf87Q8N0U7 546 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 OR10R2Q8NGX6 335 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZBTB8AQ96BR9 441 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF160Q9HCG1 818 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 C1orf226A1L170 272 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 A6NIN4 97 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 S100A7P31151 101 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CD70P32970 193 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 EEF1A2Q05639 463 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 RBMS3Q6XE24 437 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FJX1Q86VR8 437 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SEMA6DQ8NFY4 1073 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 UPRTQ96BW1 309 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 UHRF2Q96PU4 802 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 DMRT3Q9NQL9 472 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FPGSQ05932 587 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SELPLGQ14242 412 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 VASH1Q7L8A9 365 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 DNAJC5GQ8N7S2 189 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 IL1F10Q8WWZ1 152 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SLC39A13Q96H72 371 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 DPH1Q9BZG8 443 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FKRPQ9H9S5 495 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ACKR4Q9NPB9 350 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 OR1A2Q9Y585 309 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CNOT1A5YKK6 2376 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FGF18O76093 207 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 PGCP20142 388 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FOXK1P85037 733 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 RTL6Q6ICC9 239 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 LIX1LQ8IVB5 337 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 OR2T11Q8NH01 316 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 INTS12Q96CB8 462 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 INTS14Q96SY0 518 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZMAT5Q9UDW3 170 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FOLR1P15328 257 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ZXDBP98169 803 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 HAVCR2Q8TDQ0 301 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 MYADMQ96S97 322 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 NMNAT1Q9HAN9 279 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 EXO1Q9UQ84 846 aaKnown RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 URGCP-MRPS24S4R325 110 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SLC22A23A1A5C7 686 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ERVFC1P60507 584 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 PRAMEF8Q5VWM4 474 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 PRAMEF7Q5VXH5 474 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 FOXB2Q5VYV0 432 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 HIST2H3AQ71DI3 136 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 ANKLE1Q8NAG6 615 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 SORCS2Q96PQ0 1159 aa9.23□□□□□ -0.93
COL6A3-201ENST00000295550 CXXC1Q9P0U4 656 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-201ENST00000295550 A0A0B4J2A0 478 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 PPP6CO00743 305 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 DVL1O14640 695 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 KCNK2O95069 426 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 POLR2CP19387 275 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 DVL1P1P54792 670 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SRYQ05066 204 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 PHYHD1Q5SRE7 291 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CD163Q86VB7 1156 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 PTCHD1Q96NR3 888 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 CPEB1Q9BZB8 566 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SLAMF7Q9NQ25 335 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 INPP5EQ9NRR6 644 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SHPKQ9UHJ6 478 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SEC14L6B5MCN3 397 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HOXB5P09067 269 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 COX15Q7KZN9 410 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 OR2C1O95371 312 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 HBE1P02100 147 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 FBXO45P0C2W1 286 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TNFRSF1BP20333 461 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 GBX1Q14549 363 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 UBXN2BQ14CS0 331 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 KHSRPQ92945 711 aaKnown RBP eCLIP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 DUS3LQ96G46 650 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ZNF300Q96RE9 604 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TPPP3Q9BW30 176 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 C1orf123Q9NWV4 160 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SLAMF8Q9P0V8 285 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 SLC7A7Q9UM01 511 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 GAB2Q9UQC2 676 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 FREM3P0C091 2139 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 F5H5K5 113 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 MBP02144 154 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ARL16Q0P5N6 197 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TPRA1Q86W33 373 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 NANOS1Q8WY41 292 aaKnown RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ANKRD9Q96BM1 317 aaPredicted RBP9.22□□□□□ -0.93
COL6A3-201ENST00000295550 ECHDC3Q96DC8 303 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 TMEM82A0PJX8 343 aa9.22□□□□□ -0.93
COL6A3-201ENST00000295550 RPL13AP40429 203 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms