RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MREGQ8N565 214 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 ANKRD42Q8N9B4 389 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 PMM1Q92871 262 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 TEX37Q96LM6 180 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 OR52E6Q96RD3 313 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 FKRPQ9H9S5 495 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 AIG1Q9NVV5 245 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 PARPBPQ9NWS1 579 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 HAO1Q9UJM8 370 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 DCTN4Q9UJW0 460 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 AMDHD2Q9Y303 409 aa11.21□□□□□ -0.61
CD44-203ENST00000278386 ZC3H12DA2A288 527 aaKnown RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 FAM234BA2RU67 622 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 A8MV72 311 aaPredicted RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 SDHDO14521 159 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 ZNF208O43345 1280 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 IFNA2P01563 188 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 PGRP06401 933 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 DBIP07108 87 aaKnown RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 CDH2P19022 906 aaPredicted RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 RPS4Y1P22090 263 aaKnown RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 CXCR1P25024 350 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 NTF4P34130 210 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 SLC1A3P43003 542 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 SLC25A3Q00325 362 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 TGFBR3Q03167 851 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 BST1Q10588 318 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 EPS8Q12929 822 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 OR7A5Q15622 319 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 LIN52Q52LA3 116 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 COX20Q5RI15 118 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 TSPO2Q5TGU0 170 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 HHATQ5VTY9 493 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 NXNQ6DKJ4 435 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 OGFOD2Q6N063 350 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 PAQR6Q6TCH4 344 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 GPAT4Q86UL3 456 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 PEX5LQ8IYB4 626 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 CADM2Q8N3J6 435 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 C17orf78Q8N4C9 275 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 ZNF525Q8N782 197 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 C1orf162Q8NEQ5 155 aaPredicted RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 MANSC1Q9H8J5 431 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 CACYBPQ9HB71 228 aaKnown RBP11.2□□□□□ -0.62
CD44-203ENST00000278386 SLC17A5Q9NRA2 495 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 SLC7A10Q9NS82 523 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 P2RX2Q9UBL9 471 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 ARFGEF3Q5TH69 2177 aa11.2□□□□□ -0.62
CD44-203ENST00000278386 FAAHO00519 579 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 RFXANKO14593 260 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 GPRIN2O60269 458 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 ZNF500O60304 480 aaPredicted RBP11.19□□□□□ -0.62
CD44-203ENST00000278386 KRT33AO76009 404 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 AKR7A3O95154 331 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 ANP32DO95626 131 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 KRT75O95678 551 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 WNT11O96014 354 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 BCHEP06276 602 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 GPIP06744 558 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 GKN3PP0CG01 181 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 KITP10721 976 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 EPHA3P29320 983 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 IL12AP29459 219 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 DSCR9P59020 149 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 LRRC74AQ0VAA2 488 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 CEACAM7Q14002 265 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 SLC17A1Q14916 467 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 CHRFAM7AQ494W8 412 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 ZNF544Q6NX49 715 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 PODNL1Q6PEZ8 512 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 ZNF836Q6ZNA1 936 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 SPATA19Q7Z5L4 167 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 VRK2Q86Y07 508 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 ZNF440Q8IYI8 595 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 OR9K2Q8NGE7 335 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 SPATA3Q8NHX4 192 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 MGARPQ8TDB4 240 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 FAM168AQ92567 244 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 MUS81Q96NY9 551 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 TAPBPLQ9BX59 468 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 AMBRA1Q9C0C7 1298 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 MTHFD2LQ9H903 347 aaPredicted RBP11.19□□□□□ -0.62
CD44-203ENST00000278386 ADPRHL2Q9NX46 363 aa11.19□□□□□ -0.62
CD44-203ENST00000278386 RNF212BA8MTL3 300 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 ATP6V1G2-DDX39BF2Z307 99 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 H7C417 338 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 PDLIM1O00151 329 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 BMP4P12644 408 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 SLC25A16P16260 332 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 ZNF16P17020 682 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 NCF2P19878 526 aaPredicted RBP11.18□□□□□ -0.62
CD44-203ENST00000278386 MPGP29372 298 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 CRATP43155 626 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 MAP2K6P52564 334 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 COPZ1P61923 177 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 H3F3AP84243 136 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 CHRNB3Q05901 458 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 MPP2Q14168 576 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 TMEM249Q2WGJ8 235 aa11.18□□□□□ -0.62
CD44-203ENST00000278386 RPS26P11Q5JNZ5 115 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms