RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 NUP54Q7Z3B4 507 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 OR8K3Q8NH51 312 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 OTULINQ96BN8 352 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 RNF31Q96EP0 1072 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 SPSB2Q99619 263 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 MCCC2Q9HCC0 563 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 NXT1Q9UKK6 140 aaKnown RBP13.99□□□□□ -0.17
SF3B4-201ENST00000271628 NPFFR2Q9Y5X5 522 aa13.99□□□□□ -0.17
SF3B4-201ENST00000271628 SLC22A31A6NKX4 558 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 HCRTR2O43614 444 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 PRPS1P60891 318 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 FHL1Q13642 323 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 EFR3AQ14156 821 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 MRPL14Q6P1L8 145 aaKnown RBP13.98□□□□□ -0.17
SF3B4-201ENST00000271628 PAPD4Q6PIY7 484 aaKnown RBP13.98□□□□□ -0.17
SF3B4-201ENST00000271628 TMEM205Q6UW68 189 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 CPEB2Q7Z5Q1 589 aaKnown RBP13.98□□□□□ -0.17
SF3B4-201ENST00000271628 PHC2Q8IXK0 858 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 BMPERQ8N8U9 685 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 IL17RDQ8NFM7 739 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 OR5L2Q8NGL0 311 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 CTRCQ99895 268 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 CRB3Q9BUF7 120 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 JAM3Q9BX67 310 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 BARHL1Q9BZE3 327 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 ARRDC1-AS1Q9H2J1 176 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 WDR54Q9H977 334 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 ERVK13-1Q9NX77 482 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 PCDHGA5Q9Y5G8 931 aa13.98□□□□□ -0.17
SF3B4-201ENST00000271628 IQCMA0A1B0GVH7 501 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 FAM183AA6NL82 134 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 RGS5O15539 181 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 OR7A10O76100 309 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 IL1AP01583 271 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 PGCP20142 388 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 CASP3P42574 277 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 MC2RQ01718 297 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 ZNF117Q03924 483 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 ANGPT1Q15389 498 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 NIPAL3Q6P499 406 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 PAQR6Q6TCH4 344 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 TMPRSS11AQ6ZMR5 421 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 MISPQ8IVT2 679 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 LIPHQ8WWY8 451 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 NACC2Q96BF6 587 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 ADAM19Q9H013 955 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 RXFP3Q9NSD7 469 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 TNFRSF10DQ9UBN6 386 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 GRIP1Q9Y3R0 1128 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 FLRT2O43155 660 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 OIP5O43482 229 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 PPP1R3DO95685 299 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 IGHA1P01876 353 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 CPEP16870 476 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 ITPKBP27987 946 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 EVI2BP34910 448 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 FOXL2P58012 376 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 CBFBQ13951 182 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 ZNF362Q5T0B9 420 aaPredicted RBP13.97□□□□□ -0.17
SF3B4-201ENST00000271628 AGAP6Q5VW22 663 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 DPY19L2P2Q6ZN68 376 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 MARCH3Q86UD3 253 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 OR8H2Q8N162 312 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 SLC37A3Q8NCC5 494 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 BBS1Q8NFJ9 593 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 OR5W2Q8NH69 310 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 PTP4A1Q93096 173 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 AGAP4Q96P64 663 aa13.97□□□□□ -0.17
SF3B4-201ENST00000271628 GPN3Q9UHW5 284 aaPredicted RBP13.97□□□□□ -0.17
SF3B4-201ENST00000271628 SOCS6O14544 535 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 FADS1O60427 444 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 CDC40O60508 579 aaKnown RBP eCLIP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 APOL3O95236 402 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 LIMS3P0CW19 117 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 LIMS4P0CW20 117 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 NAGAP17050 411 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 P2RX1P51575 399 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 SLC26A5P58743 744 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 OR4F15Q8NGB8 312 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 RHBDD1Q8TEB9 315 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 ASB15Q8WXK1 588 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 ATOH1Q92858 354 aaPredicted RBP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 SLC25A46Q96AG3 418 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 ERMAPQ96PL5 475 aaPredicted RBP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 SECISBP2Q96T21 854 aaKnown RBP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 WDR77Q9BQA1 342 aaPredicted RBP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 ARHGAP9Q9BRR9 750 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 SMOC1Q9H4F8 434 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 NANSQ9NR45 359 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 SNTG1Q9NSN8 517 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 AKAP7Q9P0M2 348 aaPredicted RBP13.96□□□□□ -0.17
SF3B4-201ENST00000271628 KLHL21Q9UJP4 597 aa13.96□□□□□ -0.17
SF3B4-201ENST00000271628 IGKV1D-42A0A075B6H8 117 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.95□□□□□ -0.18
SF3B4-201ENST00000271628 IDH3BO43837 385 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 TSPAN19P0C672 248 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 CARTPTQ16568 116 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 ISXQ2M1V0 245 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 ZNF544Q6NX49 715 aa13.95□□□□□ -0.18
SF3B4-201ENST00000271628 KLHL36Q8N4N3 616 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms