RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 OSMP13725 252 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 CSF2RAP15509 400 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 PSMB3P49720 205 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 UBE2IP63279 158 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 SNTB1Q13884 538 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 NPSR1Q6W5P4 371 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 CCDC71Q8IV32 467 aaPredicted RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 OR2M7Q8NG81 312 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 M1APQ8TC57 530 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 SMOQ99835 787 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 TGIF2Q9GZN2 237 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 KCNK2O95069 426 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 FABP1P07148 127 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 HNRNPA2B1P22626 353 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 MRPL19P49406 292 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 EXOSC7Q15024 291 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 SLC46A3Q7Z3Q1 461 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 NOX3Q9HBY0 568 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 PXDNQ92626 1479 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 SLC7A9P82251 487 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 OR4K5Q8NGD3 323 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 SLC2A13Q96QE2 648 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 S1PR3Q99500 378 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 QRSL1Q9H0R6 528 aaKnown RBP10.65□□□□□ -0.7
PTPN4-201ENST00000263708 TRIP11Q15643 1979 aa10.65□□□□□ -0.7
PTPN4-201ENST00000263708 ZFP92A6NM28 416 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 DPP4P27487 766 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 ERV3-1Q14264 604 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 SLC36A2Q495M3 483 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 DCLRE1CQ96SD1 692 aaKnown RBP10.65□□□□□ -0.71
PTPN4-201ENST00000263708 ISYNA1Q9NPH2 558 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 THSD1Q9NS62 852 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 UBR1Q8IWV7 1749 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 ADH4P08319 380 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 ILKQ13418 452 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 GPR18Q14330 331 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 UCN3Q969E3 161 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 APH1AQ96BI3 265 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 CHRNA9Q9UGM1 479 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 V9GY05 133 aa10.65□□□□□ -0.71
PTPN4-201ENST00000263708 TTC3P53804 2025 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 A0A0A6YYC8 382 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SLC22A23A1A5C7 686 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 I3L1I5 382 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 FRS3O43559 492 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SORBS2O94875 1100 aaKnown RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 F2P00734 622 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 CRYBA1P05813 215 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 GM2AP17900 193 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 ZNF322Q6U7Q0 402 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TMEM184AQ6ZMB5 413 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 GTF2H5Q6ZYL4 71 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SUMF1Q8NBK3 374 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TMEM239Q8WW34 195 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 NMNAT1Q9HAN9 279 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 LIN7CQ9NUP9 197 aaKnown RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 RAB33AQ14088 237 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 CNTN4Q8IWV2 1026 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 BRIX1Q8TDN6 353 aaKnown RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 CORO2AQ92828 525 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SELENOIQ9C0D9 397 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 ZNF331Q9NQX6 463 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 FAM96BQ9Y3D0 163 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 ZNF587BE7ETH6 402 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TMEM244Q5VVB8 128 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 LPCAT3Q6P1A2 487 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 MOB1BQ7L9L4 216 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TMEM130Q8N3G9 435 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 VGLL2Q8N8G2 317 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 EVPLQ92817 2033 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 KLHL33A6NCF5 533 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TNFRSF10AO00220 468 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 NCR1O76036 304 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 WNT11O96014 354 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 APCDD1Q8J025 514 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 KCNJ15Q99712 375 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 HEYLQ9NQ87 328 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 LRIT1Q9P2V4 623 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 RIMS3Q9UJD0 308 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SPINT2O43291 252 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SUSD5O60279 629 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TAGLN2P37802 199 aaKnown RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 RRADP55042 308 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 PAGE3Q5JUK9 113 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 OR5AR1Q8NGP9 310 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 MOCOSQ96EN8 888 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 HRASLS5Q96KN8 279 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 NDFIP1Q9BT67 221 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SLC9B1P1A6NJY1 282 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 ATP6V1G2-DDX39BF2Z307 99 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 ZNF207O43670 478 aaKnown RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 PIN1Q13526 163 aaPredicted RBP10.64□□□□□ -0.71
PTPN4-201ENST00000263708 OR4D1Q15615 310 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TMEM31Q5JXX7 168 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SSX7Q7RTT5 188 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 TRIB1Q96RU8 372 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 CD207Q9UJ71 328 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 SLC35E2BP0CK96 405 aa10.64□□□□□ -0.71
PTPN4-201ENST00000263708 LINC00696Q6ZRV3 163 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms