RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MENTQ9BUN1 341 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ANKRD19PQ9H560 264 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TAS2R16Q9NYV7 291 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PLEKHM1Q9Y4G2 1056 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM189-UBE2V1I3L0A0 370 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ST8SIA5O15466 376 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 YIF1AO95070 293 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 RPS2P15880 293 aaKnown RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CHRNB2P17787 502 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FUT4P22083 530 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 CD34P28906 385 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 PYCR1P32322 319 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 TGM4P49221 684 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 IQCKQ8N0W5 287 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 SPEM1Q8N4L4 309 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 KISS1RQ969F8 398 aaPredicted RBP5.73□□□□□ -1.49
SCN1A-217ENST00000637988 OR4K3Q96R72 315 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 BOCQ9BWV1 1114 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 FAM234AQ9H0X4 552 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 DCSTAMPQ9H295 470 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 UCKL1Q9NWZ5 548 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 COQ4Q9Y3A0 265 aa5.73□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF318Q5VUA4 2279 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM221A6NGB7 291 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PRAMEF25A6NGN4 478 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 OR6C76A6NM76 312 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FAM166BA8MTA8 275 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 M0R296 226 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 HSPB6O14558 160 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MTCP1P56278 107 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MEF2DQ14814 521 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ATPAF1Q5TC12 328 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 NXNL2Q5VZ03 156 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 VASNQ6EMK4 673 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 OVCH1Q7RTY7 1134 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 COMMD6Q7Z4G1 85 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 EMG1Q92979 244 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 VRTNQ9H8Y1 702 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FN3KRPQ9HA64 309 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PDLIM7Q9NR12 457 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 LGALS13Q9UHV8 139 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLC22A23A1A5C7 686 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 F5H0A9 414 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 DEGS1O15121 323 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FUT1P19526 365 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SCPEP1Q9HB40 452 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 LANCL2Q9NS86 450 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 DKK3Q9UBP4 350 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PCDHGA5Q9Y5G8 931 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RNF225M0QZC1 329 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 CPMP14384 443 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 BLVRBP30043 206 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 GABRA4P48169 554 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SRP9P49458 86 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RPS18P62269 152 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLC25A11Q02978 314 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 NPY5RQ15761 445 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SIRT6Q8N6T7 355 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RBMXL1Q96E39 390 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PRRC1Q96M27 445 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RNF32Q9H0A6 362 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ISYNA1Q9NPH2 558 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TAS2R3Q9NYW6 316 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MBD1Q9UIS9 605 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 A0A1W2PPK0 400 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 HMX3A6NHT5 357 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 BOLA2-SMG1P6H3BVE0 249 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 K7ERQ8 282 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF14P17017 642 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MAP2K3P46734 347 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TPMTP51580 245 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF517Q6ZMY9 492 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 NAT8LQ8N9F0 302 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MFSD9Q8NBP5 474 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 BBS1Q8NFJ9 593 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 OR6F1Q8NGZ6 308 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLC38A5Q8WUX1 472 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 S1PR3Q99500 378 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 KLF16Q9BXK1 252 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MAGIXQ9H6Y5 334 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 COQ10BQ9H8M1 238 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ANKRD10Q9NXR5 420 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 TESQ9UGI8 421 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 ZDHHC2Q9UIJ5 367 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SLX4Q8IY92 1834 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PRAMEF27A3QJZ7 478 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 FDXRP22570 491 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 SNTB1Q13884 538 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 PRAMEF9Q5VWM5 478 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 MEX3DQ86XN8 651 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 GCNT2Q8N0V5 402 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 GPBAR1Q8TDU6 330 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 LMF1Q96S06 567 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 DMRT3Q9NQL9 472 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 NCBP2LA6PVI3 153 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RFPL1O75677 317 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RPS26P62854 115 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 HNRNPA0Q13151 305 aaKnown RBP5.72□□□□□ -1.49
SCN1A-217ENST00000637988 RAB35Q15286 201 aa5.72□□□□□ -1.49
SCN1A-217ENST00000637988 DUSP6Q16828 381 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms