RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 SHC2P98077 582 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 ARHGAP1Q07960 439 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 BEX5Q5H9J7 111 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 SAPCD1Q5SSQ6 148 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 CDC73Q6P1J9 531 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 SPNS3Q6ZMD2 512 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 ESPNLQ6ZVH7 1005 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 TMPRSS11FQ6ZWK6 438 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 CXXC5Q7LFL8 322 aaKnown RBP7.35□□□□□ -1.23
VPS11-209ENST00000622309 LRRTM1Q86UE6 522 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 MAFIPQ8WZ33 124 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 MED10Q9BTT4 135 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 GOLT1BQ9Y3E0 138 aa7.35□□□□□ -1.23
VPS11-209ENST00000622309 LAMA2P24043 3122 aaKnown RBP7.35□□□□□ -1.23
VPS11-209ENST00000622309 NINQ8N4C6 2090 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 hCG_1809904A0A1W2PP81 198 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 A0A1W2PR64 198 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 A0A1W2PRV1 198 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TRBC2A0A5B9 178 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 OR2AG2A6NM03 316 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TMEM229AB2RXF0 380 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 NPIPA7E9PJI5 369 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 FFAR2O15552 330 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SEPT4O43236 478 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 PRODHO43272 600 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SMAD6O43541 496 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 GSTZ1O43708 216 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 TSPAN3O60637 253 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 NPIPA8P0DM63 369 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 EPXP11678 715 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TBXA2RP21731 343 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 MPIP34949 423 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 THBS2P35442 1172 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 CDX1P47902 265 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 LIMS1P48059 325 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 ADPRHP54922 357 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 UBE2MP61081 183 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 CDK6Q00534 326 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 KIAA0141Q14154 515 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 NDUFAF6Q330K2 333 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 LINC00303Q3SY05 128 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 FIGNL1Q6PIW4 674 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SLC36A4Q6YBV0 504 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 ABHD13Q7L211 337 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 PLPPR4Q7Z2D5 763 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SPRYD4Q8WW59 207 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 MRPS31Q92665 395 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 ELF4Q99607 663 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 CHST5Q9GZS9 411 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 IGFLR1Q9H665 355 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 GOLGA2P5Q9HBQ8 144 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 PLSCR4Q9NRQ2 329 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TMEM248Q9NWD8 314 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 FAM120CQ9NX05 1096 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 CLEC5AQ9NY25 188 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 NDUFS8O00217 210 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 CLDN5O00501 218 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 BCL2L11O43521 198 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 HOXB5P09067 269 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 HOXA5P20719 270 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 HNF1AP20823 631 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 LMO2P25791 158 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 BMI1P35226 326 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 RPL34P49207 117 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 NDUFA6P56556 154 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SDHAF4Q5VUM1 108 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 DCAF12L2Q5VW00 463 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 KIAA1211LQ6NV74 962 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 ERN2Q76MJ5 926 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 PARGQ86W56 976 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 ARHGAP12Q8IWW6 846 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 HJURPQ8NCD3 748 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 NFKBIDQ8NI38 313 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 THRSPQ92748 146 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 EBPLQ9BY08 206 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TRIM2Q9C040 744 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TWSG1Q9GZX9 223 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 FZD8Q9H461 694 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 RDH14Q9HBH5 336 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 MRPS30Q9NP92 439 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 LHX9Q9NQ69 397 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 COMMD9Q9P000 198 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 MAP4K5Q9Y4K4 846 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 NME7Q9Y5B8 376 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 LAMA3Q16787 3333 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 HTTP42858 3142 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 IGKV6-21A0A0C4DH24 114 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 PRAMEF25A6NGN4 478 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 SYT5O00445 386 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 RNF13O43567 381 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 GCM2O75603 506 aaPredicted RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 SNRPBP14678 240 aaKnown RBP7.34□□□□□ -1.23
VPS11-209ENST00000622309 GALP22466 123 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 LHX1P48742 406 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 GLO1Q04760 184 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TWF1Q12792 350 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 TDGQ13569 410 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 NDUFA9Q16795 377 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 C2orf68Q2NKX9 166 aa7.34□□□□□ -1.23
VPS11-209ENST00000622309 CHRDL2Q6WN34 429 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms