RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CNOT9Q92600 299 aaKnown RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 SLX1AQ9BQ83 275 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 TRPV4Q9HBA0 871 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 FBXL2Q9UKC9 423 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ADAM18Q9Y3Q7 739 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 C11orf98E9PRG8 122 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 NUDT1P36639 197 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 DUSP2Q05923 314 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 FGL2Q14314 439 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 IRF4Q15306 451 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 CST6Q15828 149 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 AANATQ16613 207 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 YOD1Q5VVQ6 348 aaPredicted RBP11.66□□□□□ -0.54
LIG1-221ENST00000613670 THSD4Q6ZMP0 1018 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 ZNF227Q86WZ6 799 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 CMTM4Q8IZR5 234 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 PHOSPHO1Q8TCT1 267 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 MRGPRX3Q96LB0 322 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 SDF2Q99470 211 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 MFFQ9GZY8 342 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 ATG5Q9H1Y0 275 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 LIN7BQ9HAP6 207 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 RXFP3Q9NSD7 469 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 POT1Q9NUX5 634 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 NPFFR2Q9Y5X5 522 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 PTPRDP23468 1912 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 ATP1B1P05026 303 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 POU4F2Q12837 409 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 GPNMBQ14956 572 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 PRAMEF17Q5VTA0 474 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 CD300LDQ6UXZ3 194 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 SLC22A18Q96BI1 424 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 PCYT1BQ9Y5K3 369 aaPredicted RBP11.66□□□□□ -0.54
LIG1-221ENST00000613670 SCN2AQ99250 2005 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 TRPM6Q9BX84 2022 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 KANTRA0A1W2PQU2 76 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 SELENOFO60613 162 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 HPXP02790 462 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 CTSEP14091 401 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 TAGLNQ01995 201 aaKnown RBP11.66□□□□□ -0.54
LIG1-221ENST00000613670 OTPQ5XKR4 325 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 HEPHL1Q6MZM0 1159 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 BAIAP2L2Q6UXY1 529 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 UBE3DQ7Z6J8 389 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 ZNF687Q8N1G0 1237 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 IL17RCQ8NAC3 791 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 TOR1AIP2Q8NFQ8 470 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 PTTG3PQ9NZH4 202 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 CKLFQ9UBR5 152 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 APOBEC3BQ9UH17 382 aaKnown RBP11.66□□□□□ -0.54
LIG1-221ENST00000613670 CA5BQ9Y2D0 317 aa11.66□□□□□ -0.54
LIG1-221ENST00000613670 A0A0A6YYD5 115 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 A0A1B0GWA3 101 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 NRG2O14511 850 aaPredicted RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 KHNYNO15037 678 aaKnown RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 SLC25A12O75746 678 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 TBXA2RP21731 343 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 TM4SF4P48230 202 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 VASPP50552 380 aaPredicted RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 ARFIP1P53367 373 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 MAPK14Q16539 360 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 FAM69AQ5T7M9 428 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 OR5M10Q6IEU7 315 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 CDRT4Q8N9R6 151 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 ZC3HAV1LQ96H79 300 aaKnown RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 TRIM2Q9C040 744 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 ENKD1Q9H0I2 346 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 WASH6PQ9NQA3 447 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 SDHAF2Q9NX18 166 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 SOHLH2Q9NX45 425 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 CLDND1Q9NY35 253 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 DOCK6Q96HP0 2047 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 TMEM72A0PK05 275 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 OR14I1A6ND48 311 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 OR2AT4A6NND4 320 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 H7C1C5 153 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 PRAF2O60831 178 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 KAT7O95251 611 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 CPMP14384 443 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 RPS27P42677 84 aaKnown RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 CCR9P51686 369 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 LCN6P62502 163 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 C19orf57Q0VDD7 668 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 SQSTM1Q13501 440 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 ZNF542PQ5EBM4 170 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 KCTD9Q7L273 389 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 NLRC3Q7RTR2 1065 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 OR11H4Q8NGC9 324 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 OR52B4Q8NGK2 314 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 ASB12Q8WXK4 309 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 RAB7BQ96AH8 199 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 NRIP3Q9NQ35 241 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 CMC2Q9NRP2 79 aa11.65□□□□□ -0.54
LIG1-221ENST00000613670 MRPS33Q9Y291 106 aaKnown RBP11.65□□□□□ -0.54
LIG1-221ENST00000613670 C13orf42A0A1B0GVH6 325 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 C5orf51A6NDU8 294 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 IFNA6P05013 189 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 EPXP11678 715 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 GNALP38405 381 aa11.65□□□□□ -0.55
LIG1-221ENST00000613670 ARL4DP49703 201 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms