RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 A0A0B4J2E0 115 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 A0A1B0GX12 115 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SULT2B1O00204 365 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SYNGR4O95473 234 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 IL18BPO95998 194 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 UQCRBP14927 111 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 GGT1P19440 569 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PTNP21246 168 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 CLK1P49759 484 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 CDH12P55289 794 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SNTB1Q13884 538 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 CEACAM7Q14002 265 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PDSS1Q5T2R2 415 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF787Q6DD87 383 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 C6orf89Q6UWU4 347 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 WDR88Q6ZMY6 472 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 TSEN54Q7Z6J9 526 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 VTCN1Q7Z7D3 282 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 CARM1Q86X55 608 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 CCDC103Q8IW40 242 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 ACBD4Q8NC06 268 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 BHLHE22Q8NFJ8 381 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC26A7Q8TE54 656 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 RNF128Q8TEB7 428 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC25A43Q8WUT9 341 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF775Q96BV0 537 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 KCTD14Q9BQ13 255 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF559Q9BR84 538 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PTDSS2Q9BVG9 487 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PRRG4Q9BZD6 226 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 TRIM2Q9C040 744 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 KCNJ16Q9NPI9 418 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PAQR5Q9NXK6 330 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 KLHL28Q9NXS3 571 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PRDM4Q9UKN5 801 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 MCTS1Q9ULC4 181 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SH3GLB1Q9Y371 365 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 HDGFL3Q9Y3E1 203 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 SNX13Q9Y5W8 968 aa12.68□□□□□ -0.38
SHKBP1-217ENST00000598558 PHF3Q92576 2039 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 PCNX1Q96RV3 2341 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 CPSF4LA6NMK7 179 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SS18L1O75177 396 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 UBOX5O94941 541 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 PMS2P2O95744 297 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TCN1P20061 433 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 FPR1P21462 350 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 EDNRAP25101 427 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 NTF4P34130 210 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 OPRM1P35372 400 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 OR2B6P58173 313 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SELENOWP63302 87 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 H3F3AP84243 136 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 LTBQ06643 244 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 FXNQ16595 210 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC25A35Q3KQZ1 300 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 ENTPD8Q5MY95 495 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 GLYATQ6IB77 296 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF474Q6S9Z5 364 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 LINC00114Q6XXX2 140 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 CBLL1Q75N03 491 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 FCRLAQ7L513 359 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TRPM8Q7Z2W7 1104 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 NUFIP2Q7Z417 695 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TUSC5Q8IXB3 177 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 CNEP1R1Q8N9A8 125 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC38A4Q969I6 547 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 CPNE4Q96A23 557 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 KTI12Q96EK9 354 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 ZFP3Q96NJ6 502 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SFXN3Q9BWM7 321 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 POTEKPQ9BYX7 375 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TAS2R1Q9NYW7 299 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TESQ9UGI8 421 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC13A4Q9UKG4 626 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 TRAPPC4Q9Y296 219 aa12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 SPIN1Q9Y657 262 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-217ENST00000598558 ICE1Q9Y2F5 2266 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 A0A087WUJ7 227 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 LIPT2A6NK58 231 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 A8MVM7 634 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 A8MXE2 369 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 DVL2O14641 736 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 GSTA4O15217 222 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 CYTIPO60759 359 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 FMO6PO60774 539 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 SERPINA1P01009 418 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 CRHP06850 196 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 HSD17B1P14061 328 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 IGFBP2P18065 325 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 FKBP2P26885 142 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 P2RY4P51582 365 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 ALG10BQ5I7T1 473 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 C1orf140Q5VVS0 124 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 OR2A2Q6IF42 318 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 ULK3Q6PHR2 472 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 FAM214BQ7L5A3 538 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 LUZP2Q86TE4 346 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 FAM86B1Q8N7N1 296 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF610Q8N9Z0 462 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms