RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SLC16A1	P53985	500 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	KCNJ10	P78508	379 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	HPCA	P84074	193 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC25A3	Q00325	362 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	GABRA6	Q16445	453 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SYPL1	Q16563	259 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	NRF1	Q16656	503 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	FAM174B	Q3ZCQ3	159 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	ANXA8L1	Q5VT79	327 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	KLHL17	Q6TDP4	642 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SSX8	Q7RTT4	187 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	RNF130	Q86XS8	419 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	HIPK1	Q86Z02	1210 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	ZNF525	Q8N782	197 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SPATA3	Q8NHX4	192 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	OIT3	Q8WWZ8	545 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	TESC	Q96BS2	214 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	RADIL	Q96JH8	1075 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	ADAD1	Q96M93	576 aa	Known RBP	9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SORT1	Q99523	831 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	DHRS9	Q9BPW9	319 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	RHNO1	Q9BSD3	238 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	INPP5K	Q9BT40	448 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	NUF2	Q9BZD4	464 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC38A1	Q9H2H9	487 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	EXOSC3	Q9NQT5	275 aa	Known RBP	9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	CBLN4	Q9NTU7	201 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	TMEM181	Q9P2C4	612 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	MGAT4B	Q9UQ53	548 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	TMED7	Q9Y3B3	224 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	RAP2C	Q9Y3L5	183 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	RTTN	Q86VV8	2226 aa		9.25	□□□□□ -0.93
LSM4-205	ENST00000597776	TMEM72	A0PK05	275 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	CCDC154	A6NI56	674 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	RNF212B	A8MTL3	300 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776		A8MV72	311 aa	Predicted RBP	9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	PDLIM1	O00151	329 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	DNPH1	O43598	174 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	BGN	P21810	368 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	TACR3	P29371	465 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	S100A3	P33764	101 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	CDKN2C	P42773	168 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	MAGEA8	P43361	318 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC1A6	P48664	564 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	RPL14	P50914	215 aa	Known RBP	9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	POLR2H	P52434	150 aa	Known RBP	9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	UFM1	P61960	85 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	H3F3A	P84243	136 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	KRT71	Q3SY84	523 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	COX20	Q5RI15	118 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	TSPO2	Q5TGU0	170 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	AP1AR	Q63HQ0	302 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	CLEC2A	Q6UVW9	174 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	FBXL14	Q8N1E6	418 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	MUC15	Q8N387	334 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	WDR31	Q8NA23	367 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	VPS37A	Q8NEZ2	397 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	OR10H5	Q8NGA6	315 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	PNPT1	Q8TCS8	783 aa	Known RBP	9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	TRIM44	Q96DX7	344 aa	Predicted RBP	9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	CCDC115	Q96NT0	180 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	MUS81	Q96NY9	551 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	TMEM109	Q9BVC6	243 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	MANSC1	Q9H8J5	431 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC7A10	Q9NS82	523 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	PNPO	Q9NVS9	261 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	OSGIN1	Q9UJX0	560 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	FLVCR1	Q9Y5Y0	555 aa		9.24	□□□□□ -0.93
LSM4-205	ENST00000597776	PLCE1	Q9P212	2302 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	AGAP5	A6NIR3	686 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	BIRC5	O15392	142 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	LY6H	O94772	140 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	GSN	P06396	782 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	ALDOC	P09972	364 aa	Known RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	LBP	P18428	481 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	IL12A	P29459	219 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	CLK1	P49759	484 aa	Known RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	CLNS1A	P54105	237 aa	Known RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC35A1	P78382	337 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	MPP2	Q14168	576 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC17A1	Q14916	467 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	RAB35	Q15286	201 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	TMEM249	Q2WGJ8	235 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	C6orf52	Q5T4I8	152 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	MRPL2	Q5T653	305 aa	Known RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	OR7E24	Q6IFN5	339 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	PHC2	Q8IXK0	858 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	WDR60	Q8WVS4	1066 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	DDIT4L	Q96D03	193 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	TRNT1	Q96Q11	434 aa	Known RBP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	PANX1	Q96RD7	426 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	AMBRA1	Q9C0C7	1298 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC17A5	Q9NRA2	495 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	RLIM	Q9NVW2	624 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	UPB1	Q9UBR1	384 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	BTNL2	Q9UIR0	455 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	TRAPPC4	Q9Y296	219 aa		9.23	□□□□□ -0.93
LSM4-205	ENST00000597776	SLC9A8	Q9Y2E8	581 aa		9.23	□□□□□ -0.93

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