RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 H1F0P07305 194 aaKnown RBP13.51□□□□□ -0.25
TRIM28-207ENST00000597136 IFNA8P32881 189 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 LHX2P50458 406 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 HMGA2P52926 109 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 CDH12P55289 794 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 TPD52P55327 224 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-207ENST00000597136 CLDN15P56746 228 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 SESN3P58005 492 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 SRYQ05066 204 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 ST3GAL3Q11203 375 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 DGCR6Q14129 220 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 RAET1LQ5VY80 246 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 RTL6Q6ICC9 239 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 PLXDC2Q6UX71 529 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 GDF7Q7Z4P5 450 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 ZNF563Q8TA94 476 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 DNAJA4Q8WW22 397 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-207ENST00000597136 ADAM19Q9H013 955 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 SEMA6AQ9H2E6 1030 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 MAN2C1Q9NTJ4 1040 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 RPS6KB2Q9UBS0 482 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 SLC7A7Q9UM01 511 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 CAMK2AQ9UQM7 478 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 LYVE1Q9Y5Y7 322 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 ALPK2Q86TB3 2170 aa13.51□□□□□ -0.25
TRIM28-207ENST00000597136 CLEC18AA5D8T8 446 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 ETV2O00321 342 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 BCKDKO14874 412 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 GADD45GO95257 159 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 ACTL6AO96019 429 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 THRBP10828 461 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 GP1BBP13224 206 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 CHMP24386 653 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 ZNF41P51814 821 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 SUCLG1P53597 346 aaKnown RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 IST1P53990 364 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 SMIM11AP58511 58 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 FOXD4Q12950 439 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 PPP1R8Q12972 351 aaKnown RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 GLYR1Q49A26 553 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 C4orf17Q53FE4 359 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 WLSQ5T9L3 541 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 FBXW10Q5XX13 1052 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 ULK3Q6PHR2 472 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 CLEC18BQ6UXF7 455 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 MARVELD2Q8N4S9 558 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 CLEC18CQ8NCF0 446 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 OR52J3Q8NH60 311 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 TMEM234Q8WY98 164 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 ST8SIA1Q92185 356 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 C3orf49Q96BT1 292 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 REEP1Q9H902 201 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 SAMHD1Q9Y3Z3 626 aaKnown RBP13.5□□□□□ -0.25
TRIM28-207ENST00000597136 FAM215AQ9Y5M1 114 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 U3KQV3 271 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 CRYBG3Q68DQ2 2970 aa13.5□□□□□ -0.25
TRIM28-207ENST00000597136 A0A087WZY1 265 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 H3BML4 177 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TNFRSF11BO00300 401 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 PRKCAP17252 672 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 LIMS1P48059 325 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 DLX5P56178 289 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 CLDN18P56856 261 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 CLDN20P56880 219 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SLC34A1Q06495 639 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 FOXF1Q12946 379 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TRAM2Q15035 370 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ALG10BQ5I7T1 473 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SWT1Q5T5J6 900 aaKnown RBP13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TMEM179BQ7Z7N9 219 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 GTPBP8Q8N3Z3 284 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-207ENST00000597136 OR4C15Q8NGM1 316 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SLC7A13Q8TCU3 470 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SLC38A4Q969I6 547 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 EPYCQ99645 322 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 FUZQ9BT04 418 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 PRDM14Q9GZV8 571 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ANKRD19PQ9H560 264 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SELENONQ9NZV5 590 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SLC5A6Q9Y289 635 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 MEMO1Q9Y316 297 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 PKDREJQ9NTG1 2253 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TRBV4-1A0A0J9YWV2 114 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 FAM47E-STBD1D6RA91 191 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 CHP2O43745 196 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 E2F6O75461 281 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 NTN1O95631 604 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 CPN1P15169 458 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ZNF708P17019 499 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ACVR2AP27037 513 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 TACR3P29371 465 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 DNAJA1P31689 397 aaKnown RBP13.49□□□□□ -0.25
TRIM28-207ENST00000597136 SLC25A53Q5H9E4 307 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 FGD3Q5JSP0 725 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 LINC00114Q6XXX2 140 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 WDR88Q6ZMY6 472 aa13.49□□□□□ -0.25
TRIM28-207ENST00000597136 ATG4DQ86TL0 474 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-207ENST00000597136 NKAIN4Q8IVV8 208 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms