RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HLA-DQB1P01920 261 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 CBX5P45973 191 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 VEGFCP49767 419 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 ASPGQ86U10 573 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 SMARCD2Q92925 531 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 FGF22Q9HCT0 170 aa14.11□□□□□ -0.15
UPF1-204ENST00000596842 SGCEO43556 437 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 HPXP02790 462 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ERGP11308 486 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 RBMS1P29558 406 aaKnown RBP14.1□□□□□ -0.15
UPF1-204ENST00000596842 PER3P56645 1201 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 PDGFRLQ15198 375 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TEX261Q6UWH6 196 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 OR2L8Q8NGY9 312 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ZNF681Q96N22 645 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 IL21RQ9HBE5 538 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TBC1D29Q9UFV1 150 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 GTF2A1LQ9UNN4 478 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 U3KQ87 197 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TRIOO75962 3097 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 CXorf51AA0A1B0GTR3 108 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 STX11O75558 287 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 RASGRP1O95267 797 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 IFNA7P01567 189 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 NPR2P20594 1047 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 FRMD1Q8N878 549 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 MOAP1Q96BY2 351 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 GIMAP5Q96F15 307 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 C12orf10Q9HB07 376 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 GMEB2Q9UKD1 530 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ZMIZ1Q9ULJ6 1067 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 MRPS2Q9Y399 296 aaKnown RBP14.1□□□□□ -0.15
UPF1-204ENST00000596842 IER3IP1Q9Y5U9 82 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TO15178 435 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TRIM3O75382 744 aaPredicted RBP14.1□□□□□ -0.15
UPF1-204ENST00000596842 GDNFP39905 211 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ZNF136P52737 540 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 RUNX2Q13950 521 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 DEFB110Q30KQ9 67 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ETFBKMTQ8IXQ9 262 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 PATE1Q8WXA2 126 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ZNF285Q96NJ3 590 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 RANBP3Q9H6Z4 567 aaPredicted RBP14.1□□□□□ -0.15
UPF1-204ENST00000596842 IFT22Q9H7X7 185 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 ZNF69Q9UC07 566 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 STON1Q9Y6Q2 735 aa14.1□□□□□ -0.15
UPF1-204ENST00000596842 TRABD2BA6NFA1 517 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 P2RX6O15547 441 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 B3GALT2O43825 422 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 FGF19O95750 216 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 IL9P15248 144 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 CENPAP49450 140 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 MRM1Q6IN84 353 aaKnown RBP14.09□□□□□ -0.15
UPF1-204ENST00000596842 POMZP3Q6PJE2 187 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 VN1R4Q7Z5H5 301 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 DDOQ99489 341 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 PRSS27Q9BQR3 290 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 KLK11Q9UBX7 282 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 TOR1AO14656 332 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 OR10H2O60403 315 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 GMDSO60547 372 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 ALDOBP05062 364 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 CBR1P16152 277 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 BTCP35070 178 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 TPMTP51580 245 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 AMZ1Q400G9 498 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 AGBL4Q5VU57 503 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 PARGQ86W56 976 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 FGF13Q92913 245 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 YIPF5Q969M3 257 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 MARC2Q969Z3 335 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 SEMA4CQ9C0C4 833 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 NT5DC2Q9H857 520 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 ZFP64Q9NPA5 681 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 REV3LO60673 3130 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 POM121BA6NF01 834 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 CACNB4O00305 520 aaPredicted RBP14.09□□□□□ -0.15
UPF1-204ENST00000596842 ARPC1BO15143 372 aaKnown RBP14.09□□□□□ -0.15
UPF1-204ENST00000596842 CEACAM5P06731 702 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 HK1P19367 917 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 THBS2P35442 1172 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 RPS27P42677 84 aaKnown RBP14.09□□□□□ -0.15
UPF1-204ENST00000596842 ZNF85Q03923 595 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 EXOSC2Q13868 293 aaKnown RBP14.09□□□□□ -0.15
UPF1-204ENST00000596842 EIPR1Q53HC9 387 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 ZNF542PQ5EBM4 170 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 ALG10BQ5I7T1 473 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 YAF2Q8IY57 180 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 C1orf216Q8TAB5 229 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 SPPL3Q8TCT6 385 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 ZNF416Q9BWM5 594 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 FKRPQ9H9S5 495 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 MED17Q9NVC6 651 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 KCNE5Q9UJ90 142 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 SLC27A6Q9Y2P4 619 aa14.09□□□□□ -0.15
UPF1-204ENST00000596842 A0A087WV48 116 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 TEX51A0A1B0GUA7 166 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 MEIS3P1A6NDR6 274 aa14.08□□□□□ -0.15
UPF1-204ENST00000596842 BHLHE40O14503 412 aa14.08□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms