RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 OR11A1Q9GZK7 315 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 EMC3Q9P0I2 261 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.19□□□□□ -0.3
SS18-212ENST00000579061 PRR14LQ5THK1 2151 aa13.19□□□□□ -0.3
SS18-212ENST00000579061 GPR171O14626 319 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 ANGPT2O15123 496 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 CXCR1P25024 350 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 PRKAR1BP31321 381 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 SLC16A1P53985 500 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 SLC35A1P78382 337 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 H3F3AP84243 136 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 CDK6Q00534 326 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 P2RY6Q15077 328 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 PAMR1Q6UXH9 720 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 GALNT5Q7Z7M9 940 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 DHDDSQ86SQ9 333 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 KRT73Q86Y46 540 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 BHLHE22Q8NFJ8 381 aaPredicted RBP13.18□□□□□ -0.3
SS18-212ENST00000579061 STEAP2Q8NFT2 490 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 NFKBIDQ8NI38 313 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 ZNF300Q96RE9 604 aaPredicted RBP13.18□□□□□ -0.3
SS18-212ENST00000579061 FOXC2Q99958 501 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 CPPED1Q9BRF8 314 aaPredicted RBP13.18□□□□□ -0.3
SS18-212ENST00000579061 TMEM120AQ9BXJ8 343 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 LIME1Q9H400 295 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 IKZF5Q9H5V7 419 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 CCDC134Q9H6E4 229 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 MED4Q9NPJ6 270 aa13.18□□□□□ -0.3
SS18-212ENST00000579061 MED13LQ71F56 2210 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 PRRC2AP48634 2157 aaKnown RBP13.17□□□□□ -0.3
SS18-212ENST00000579061 ZNF716A6NP11 495 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 SIAH2O43255 324 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 THBDP07204 575 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 IMPDH2P12268 514 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 KLK2P20151 261 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CCNA2P20248 432 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 SLC6A2P23975 617 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 OR2B6P58173 313 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 RBBP4Q09028 425 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 SCARB2Q14108 478 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 POU4F3Q15319 338 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 SFRP5Q5T4F7 317 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 ANKRD34AQ69YU3 496 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 DHRS4L2Q6PKH6 230 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 Q6ZT83 130 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 C22orf34Q6ZV56 151 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 SERPINA11Q86U17 422 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CXorf67Q86X51 503 aaPredicted RBP13.17□□□□□ -0.3
SS18-212ENST00000579061 C10orf111Q8N326 155 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CADM2Q8N3J6 435 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 HIPK4Q8NE63 616 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 MBD6Q96DN6 1003 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 ANKRD27Q96NW4 1050 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CGREF1Q99674 301 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 NAA11Q9BSU3 229 aaPredicted RBP13.17□□□□□ -0.3
SS18-212ENST00000579061 ACTR6Q9GZN1 396 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CXXC4Q9H2H0 198 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 EVA1AQ9H8M9 152 aa13.17□□□□□ -0.3
SS18-212ENST00000579061 CCM2LQ9NUG4 571 aaPredicted RBP13.17□□□□□ -0.3
SS18-212ENST00000579061 C6orf203Q9P0P8 240 aaPredicted RBP13.17□□□□□ -0.3
SS18-212ENST00000579061 A0A1W2PPR1 153 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PRORSD1PA6NEY8 169 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ZNF814B7Z6K7 855 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ATP8B1O43520 1251 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 RAF1P04049 648 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 GPIP06744 558 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PRG2P13727 222 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 LOXP28300 417 aaPredicted RBP13.16□□□□□ -0.3
SS18-212ENST00000579061 ART1P52961 327 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ARFIP2P53365 341 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ITGADQ13349 1161 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ADRM1Q16186 407 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 BEX5Q5H9J7 111 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PAQR6Q6TCH4 344 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 RETREG3Q86VR2 466 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 C3orf49Q96BT1 292 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PIK3IP1Q96FE7 263 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ZC3HAV1LQ96H79 300 aaKnown RBP13.16□□□□□ -0.3
SS18-212ENST00000579061 ZNF607Q96SK3 696 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PIF1Q9H611 641 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 C12orf10Q9HB07 376 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 FGFR1OP2Q9NVK5 253 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 PLEKHA6Q9Y2H5 1048 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 HIVEP1P15822 2718 aa13.16□□□□□ -0.3
SS18-212ENST00000579061 ROS1P08922 2347 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 ZC3H12DA2A288 527 aaKnown RBP13.15□□□□□ -0.3
SS18-212ENST00000579061 A8MVM7 634 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 TMEM229AB2RXF0 380 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 KLF4O43474 513 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 SERPINB7O75635 380 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 ATE1O95260 518 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 ADAP00813 363 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 FPR1P21462 350 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 IL32P24001 234 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 ADSLP30566 484 aaPredicted RBP13.15□□□□□ -0.3
SS18-212ENST00000579061 IDUAP35475 653 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 NFYCQ13952 458 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 COQ5Q5HYK3 327 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 SSX8Q7RTT4 187 aa13.15□□□□□ -0.3
SS18-212ENST00000579061 ATG4DQ86TL0 474 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms