RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ARG2P78540 354 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 GINS1Q14691 196 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF74Q16587 644 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 ZBED5Q49AG3 693 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 BROXQ5VW32 411 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 SLX4IPQ5VYV7 408 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 RPL13AP3Q6NVV1 102 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 UGT2A3Q6UWM9 527 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF620Q6ZNG0 422 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 OAFQ86UD1 273 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 SPACA3Q8IXA5 215 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 GTPBP8Q8N3Z3 284 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 C10orf53Q8N6V4 93 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 OR2M7Q8NG81 312 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 TEX47Q8TBZ9 253 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 LIPHQ8WWY8 451 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 KTI12Q96EK9 354 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 C5orf34Q96MH7 638 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 EGLN3Q9H6Z9 239 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 PNPLA3Q9NST1 481 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 TUBA8Q9NY65 449 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 DKKL1Q9UK85 242 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 KLF13Q9Y2Y9 288 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 MRPS18CQ9Y3D5 142 aaKnown RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF337Q9Y3M9 751 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 SPIN1Q9Y657 262 aaPredicted RBP12.39□□□□□ -0.43
CCDC40-209ENST00000573474 MED13Q9UHV7 2174 aa12.39□□□□□ -0.43
CCDC40-209ENST00000573474 CPAMD8Q8IZJ3 1885 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 LRRC3CA6NJW4 275 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SHISA8B8ZZ34 492 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 NME2P1O60361 137 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 ZIC3O60481 467 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 NPIPB7O75200 414 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 RPSAP08865 295 aaKnown RBP12.38□□□□□ -0.43
CCDC40-209ENST00000573474 NME2P22392 152 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SRD5A2P31213 254 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 CHN2P52757 468 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SMSP52788 366 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 CDC42P60953 191 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 ISL1P61371 349 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 CDK5Q00535 292 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 FOXO1Q12778 655 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.38□□□□□ -0.43
CCDC40-209ENST00000573474 C1orf140Q5VVS0 124 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TMEM236Q5W0B7 351 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SMARCD3Q6STE5 483 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SLC46A3Q7Z3Q1 461 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 LSRQ86X29 649 aaPredicted RBP12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SULF2Q8IWU5 870 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 DEPDC4Q8N2C3 294 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SLC43A2Q8N370 569 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 OR13C2Q8NGS9 318 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 OR6S1Q8NH40 331 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 FANK1Q8TC84 345 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TAAR8Q969N4 342 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 DDIT4LQ96D03 193 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SAMD8Q96LT4 415 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TNFRSF13CQ96RJ3 184 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 NPAS1Q99742 590 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TSSK6Q9BXA6 273 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TEX12Q9BXU0 123 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 POTEKPQ9BYX7 375 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 PLA2G12AQ9BZM1 189 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 OR52D1Q9H346 318 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SLC25A19Q9HC21 320 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 NANSQ9NR45 359 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 TBC1D23Q9NUY8 699 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 SIGLEC7Q9Y286 467 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 PCDHGB5Q9Y5G0 923 aa12.38□□□□□ -0.43
CCDC40-209ENST00000573474 ZC3H12DA2A288 527 aaKnown RBP12.37□□□□□ -0.43
CCDC40-209ENST00000573474 PINLYPA6NC86 204 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 KLRC4-KLRK1H3BQV0 150 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 OR2T1O43869 369 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 EFNA2O43921 213 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 AHSA1O95433 338 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 MT-ATP6P00846 226 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 BGLAPP02818 100 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 HIST1H2ABP04908 130 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 BMP7P18075 431 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 RPS5P46782 204 aaKnown RBP12.37□□□□□ -0.43
CCDC40-209ENST00000573474 IL5RAQ01344 420 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 LTBQ06643 244 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 TMEM44Q2T9K0 475 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 ANKDD1AQ495B1 522 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 ZNF766Q5HY98 468 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 C12orf73Q69YU5 71 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 SLC27A4Q6P1M0 643 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 HIST3H2AQ7L7L0 130 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 CCDC71Q8IV32 467 aaPredicted RBP12.37□□□□□ -0.43
CCDC40-209ENST00000573474 LRRC17Q8N6Y2 441 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 TMEM178AQ8NBL3 297 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 OR52L1Q8NGH7 329 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 OR8D4Q8NGM9 314 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 OR51A7Q8NH64 312 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 FAM81AQ8TBF8 368 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 FBLIM1Q8WUP2 373 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 GATA6Q92908 595 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 HIST1H2ACQ93077 130 aa12.37□□□□□ -0.43
CCDC40-209ENST00000573474 SCMH1Q96GD3 660 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms