RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PAIP2Q9BPZ3 127 aaKnown RBP14.17□□□□□ -0.14
CLN3-229ENST00000567963 INPP5KQ9BT40 448 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 REG4Q9BYZ8 158 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 SLCO5A1Q9H2Y9 848 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ALG2Q9H553 416 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 MTHFD2LQ9H903 347 aaPredicted RBP14.17□□□□□ -0.14
CLN3-229ENST00000567963 FAIMQ9NVQ4 179 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 ASB6Q9NWX5 421 aa14.17□□□□□ -0.14
CLN3-229ENST00000567963 TMED7-TICAM2A0A0A6YYA0 188 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 CIB4A0PJX0 185 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 CCT8L1PA6NM43 557 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 AP3D1O14617 1153 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 ZNF208O43345 1280 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 NDUFS7O75251 213 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 IGHV4-39P01824 125 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 MAGEA8P43361 318 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 ANXA11P50995 505 aaKnown RBP14.16□□□□□ -0.14
CLN3-229ENST00000567963 OR2B6P58173 313 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 LRRC74AQ0VAA2 488 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 DNM1P46Q6ZS02 220 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 OR52N5Q8NH56 324 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 PMM1Q92871 262 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 DDIT4LQ96D03 193 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 TAS2R16Q9NYV7 291 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 MALT1Q9UDY8 824 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 OSGIN1Q9UJX0 560 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 TMED7Q9Y3B3 224 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 GPR45Q9Y5Y3 372 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 SLC25A15Q9Y619 301 aa14.16□□□□□ -0.14
CLN3-229ENST00000567963 TMEM72A0PK05 275 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 FAAHO00519 579 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 EIF1BO60739 113 aaKnown RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 GSNP06396 782 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 IMPDH2P12268 514 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 IL7RP16871 459 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 RPS4Y1P22090 263 aaKnown RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 EPHA3P29320 983 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 TACR3P29371 465 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 SLC1A3P43003 542 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 POLR2HP52434 150 aaKnown RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 MAP2K6P52564 334 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 CDH11P55287 796 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 SLC35A1P78382 337 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 COX20Q5RI15 118 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 OR7E24Q6IFN5 339 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 TMEM108Q6UXF1 575 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 PIAS4Q8N2W9 510 aaPredicted RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 WDR60Q8WVS4 1066 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 MUS81Q96NY9 551 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 WDR55Q9H6Y2 383 aaPredicted RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 GDF2Q9UK05 429 aaPredicted RBP14.15□□□□□ -0.14
CLN3-229ENST00000567963 ADAM21Q9UKJ8 722 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 RAB21Q9UL25 225 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 MGAT4BQ9UQ53 548 aa14.15□□□□□ -0.14
CLN3-229ENST00000567963 HDAC3O15379 428 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 NR2F1P10589 423 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 PTAFRP25105 342 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 FOXG1P55316 489 aaPredicted RBP14.14□□□□□ -0.15
CLN3-229ENST00000567963 GNA13Q14344 377 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 GABRA6Q16445 453 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 HHATQ5VTY9 493 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 AGAP6Q5VW22 663 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 CROCCP2Q86T23 111 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 LSRQ86X29 649 aaPredicted RBP14.14□□□□□ -0.15
CLN3-229ENST00000567963 PNPT1Q8TCS8 783 aaKnown RBP14.14□□□□□ -0.15
CLN3-229ENST00000567963 MDFIQ99750 246 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 NAA11Q9BSU3 229 aaPredicted RBP14.14□□□□□ -0.15
CLN3-229ENST00000567963 ADAM19Q9H013 955 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 THAP1Q9NVV9 213 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 PARPBPQ9NWS1 579 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 B3GALT5Q9Y2C3 310 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 CR1P17927 2039 aa14.14□□□□□ -0.15
CLN3-229ENST00000567963 ANK3Q12955 4377 aaKnown RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 A0A1W2PR80 420 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 CFAP73A6NFT4 308 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 TRPC5OSA6NMA1 111 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 E7EQL1 145 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 PDLIM1O00151 329 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 SNNO75324 88 aaPredicted RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 CRLF1O75462 422 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 DBIP07108 87 aaKnown RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 ITGA5P08648 1049 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 PTNP21246 168 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 CD40P25942 277 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 ZNF83P51522 516 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 WDR4P57081 412 aaKnown RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 EPS8Q12929 822 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 SLC17A1Q14916 467 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 MAPK11Q15759 364 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 MRPL2Q5T653 305 aaKnown RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 KLHL17Q6TDP4 642 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 ANKRD42Q8N9B4 389 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 GLB1L3Q8NCI6 653 aaPredicted RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 OR52E4Q8NGH9 312 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 HS6ST2Q96MM7 605 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 ZBTB18Q99592 522 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 BARX1Q9HBU1 254 aaPredicted RBP14.13□□□□□ -0.15
CLN3-229ENST00000567963 RLIMQ9NVW2 624 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 SLC9A8Q9Y2E8 581 aa14.13□□□□□ -0.15
CLN3-229ENST00000567963 FLVCR1Q9Y5Y0 555 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms