RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DSTNP60981 165 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 RGNQ15493 299 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 RPS26P11Q5JNZ5 115 aaPredicted RBP13.14□□□□□ -0.31
CLN3-213ENST00000565047 RNF220Q5VTB9 566 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 PRSS57Q6UWY2 283 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.14□□□□□ -0.31
CLN3-213ENST00000565047 GALNT5Q7Z7M9 940 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 ZNF611Q8N823 705 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 OR52P1PQ8NH57 321 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 KISS1RQ969F8 398 aaPredicted RBP13.14□□□□□ -0.31
CLN3-213ENST00000565047 DNAJA3Q96EY1 480 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 CCL19Q99731 98 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 CCDC28BQ9BUN5 200 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 GSX2Q9BZM3 304 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 RMND5AQ9H871 391 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 BCL2L10Q9HD36 194 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 TCF7L2Q9NQB0 619 aa13.14□□□□□ -0.31
CLN3-213ENST00000565047 ZNF701Q9NV72 531 aaPredicted RBP13.14□□□□□ -0.31
CLN3-213ENST00000565047 UQCRHLA0A096LP55 91 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 A0A096LPI6 279 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 A0A0G2JPF8 293 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 DPRXA6NFQ7 191 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HNRNPCL2B2RXH8 293 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HNRNPCL3B7ZW38 293 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 PDLIM1O00151 329 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 CLIC1O00299 241 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HS3ST1O14792 307 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HNRNPCL1O60812 293 aaKnown RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 LYZL6O75951 148 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 THBS1P07996 1170 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 GKN3PP0CG01 181 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HNRNPCL4P0DMR1 293 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 PRG2P13727 222 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 HOXB4P17483 251 aaPredicted RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 CCNA2P20248 432 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 P2RY4P51582 365 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 CRISP3P54108 245 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 SLC17A1Q14916 467 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 LIN52Q52LA3 116 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 PAGE3Q5JUK9 113 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 PRAMEF8Q5VWM4 474 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 PRAMEF7Q5VXH5 474 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 BHLHA15Q7RTS1 189 aaPredicted RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 PEX5LQ8IYB4 626 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 ZNF440Q8IYI8 595 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 ZNF433Q8N7K0 673 aaPredicted RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 POTEKPQ9BYX7 375 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 A4GALTQ9NPC4 353 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 THUMPD1Q9NXG2 353 aaKnown RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 CALML5Q9NZT1 146 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 ZNF443Q9Y2A4 671 aaPredicted RBP13.13□□□□□ -0.31
CLN3-213ENST00000565047 DSCAMO60469 2012 aa13.13□□□□□ -0.31
CLN3-213ENST00000565047 NIPBLQ6KC79 2804 aaeCLIP13.12□□□□□ -0.31
CLN3-213ENST00000565047 OVOL3O00110 214 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 SMPD2O60906 423 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 NPIPB7O75200 414 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 ANP32DO95626 131 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 DANCRP0C864 163 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 H2AFXP16104 143 aaPredicted RBP13.12□□□□□ -0.31
CLN3-213ENST00000565047 IL32P24001 234 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 FOXG1P55316 489 aaPredicted RBP13.12□□□□□ -0.31
CLN3-213ENST00000565047 GNA13Q14344 377 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 FBXW9Q5XUX1 488 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 CIARTQ8N365 385 aaPredicted RBP13.12□□□□□ -0.31
CLN3-213ENST00000565047 ZIC4Q8N9L1 334 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 PIGXQ8TBF5 258 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 LRRC8CQ8TDW0 803 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 STON2Q8WXE9 905 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 AKAP1Q92667 903 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLN3-213ENST00000565047 MAL2Q969L2 176 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 DDIT4LQ96D03 193 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 POM121Q96HA1 1249 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 SMR3AQ99954 134 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 SPATA9Q9BWV2 254 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 TMEM45AQ9NWC5 275 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 NPAP1Q9NZP6 1156 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 MALT1Q9UDY8 824 aa13.12□□□□□ -0.31
CLN3-213ENST00000565047 LIPT2A6NK58 231 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 GPR171O14626 319 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 POLR3GO15318 223 aaPredicted RBP13.11□□□□□ -0.31
CLN3-213ENST00000565047 EIF1BO60739 113 aaKnown RBP13.11□□□□□ -0.31
CLN3-213ENST00000565047 PTH2RP49190 550 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 ATP4BP51164 291 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 AQP5P55064 265 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 OR2B6P58173 313 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 SLC35A1P78382 337 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 FADDQ13158 208 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 CAPRIN1Q14444 709 aaKnown RBP13.11□□□□□ -0.31
CLN3-213ENST00000565047 ZSWIM7Q19AV6 140 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 Q5PR19 223 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 TIMM23BQ5SRD1 257 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 C6orf10Q5SRN2 563 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 PAQR6Q6TCH4 344 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 COMTD1Q86VU5 262 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 P2RY8Q86VZ1 359 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 CKAP2Q8WWK9 683 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 SLC35B4Q969S0 331 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 C3orf49Q96BT1 292 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 ZHX1-C8orf76Q96EF9 292 aa13.11□□□□□ -0.31
CLN3-213ENST00000565047 C18orf12Q96KH6 178 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms