RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TUBA1AQ71U36 451 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 AAED1Q7RTV5 226 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ABHD12BQ7Z5M8 362 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 SLC22A9Q8IVM8 553 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CCNYL1Q8N7R7 359 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CLHC1Q8NHS4 586 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF563Q8TA94 476 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CKAP2Q8WWK9 683 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ANKRD27Q96NW4 1050 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TSSK3Q96PN8 268 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 DOK1Q99704 481 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 NAPGQ99747 312 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 SLC6A7Q99884 636 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 NAA11Q9BSU3 229 aaPredicted RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ACTRT3Q9BYD9 372 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 OR11A1Q9GZK7 315 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 LAT2Q9GZY6 243 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 RAB17Q9H0T7 212 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TPK1Q9H3S4 243 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 REEP4Q9H6H4 257 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CTPS2Q9NRF8 586 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 DDX28Q9NUL7 540 aaKnown RBP6.34□□□□□ -1.39
VPS4A-203ENST00000564399 ACER3Q9NUN7 267 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TMEM45AQ9NWC5 275 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 CHRNA9Q9UGM1 479 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 HDGFL3Q9Y3E1 203 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 KCNE3Q9Y6H6 103 aa6.34□□□□□ -1.39
VPS4A-203ENST00000564399 TRAV20A0A0B4J274 112 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 OR6C65A6NJZ3 312 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 POC1B-GALNT4F8VUJ3 575 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 NPIPB9F8W1W9 429 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 NR5A2O00482 541 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 DNPH1O43598 174 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 EIF1BO60739 113 aaKnown RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TBX19O60806 448 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 LGI1O95970 557 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 KRT16P08779 473 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 HKR1P10072 659 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 GAAP10253 952 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ARAFP10398 606 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 PAX7P23759 505 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 CALCRP30988 508 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 FRKP42685 505 aaPredicted RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 CCT3P49368 545 aaKnown RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 PRKAA2P54646 552 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 UBA52P62987 128 aaKnown RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 SLC35A1P78382 337 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 HGFACQ04756 655 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 C2orf54Q08AI8 447 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 SKP2Q13309 424 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 SPDYE7PQ495Y7 208 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF311Q5JNZ3 666 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ZDHHC24Q6UX98 284 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TRIM46Q7Z4K8 759 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 CARM1Q86X55 608 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 CDK20Q8IZL9 346 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ZDHHC22Q8N966 263 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 POMGNT2Q8NAT1 580 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 NUP37Q8NFH4 326 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 OR56A1Q8NGH5 318 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 AURKBQ96GD4 344 aaPredicted RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF764Q96H86 408 aaPredicted RBP6.33□□□□□ -1.4
VPS4A-203ENST00000564399 PAFAH2Q99487 392 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF442Q9H7R0 627 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 SEC61A2Q9H9S3 476 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 ESM1Q9NQ30 184 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 SLC52A3Q9NQ40 469 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 C1orf109Q9NX04 203 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM216Q9P0N5 145 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM181Q9P2C4 612 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 BAIAP2L1Q9UHR4 511 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TRAPPC4Q9Y296 219 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 PPIAL4AQ9Y536 164 aa6.33□□□□□ -1.4
VPS4A-203ENST00000564399 TRRAPQ9Y4A5 3859 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 A0A096LPE4 126 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 A0A1W2PPZ6 126 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 TMEM129A0AVI4 362 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 ZNF587BE7ETH6 402 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 WNT9BO14905 357 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 PPIHO43447 177 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 DNAJA2O60884 412 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 AVPP01185 164 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 ANPEPP15144 967 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 ADRA2CP18825 462 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 SDC1P18827 310 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 TCN1P20061 433 aaPredicted RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 COL8A2P25067 703 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 FPR2P25090 351 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 ZFP36P26651 326 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 FKBP2P26885 142 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 CLK1P49759 484 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 MYBPC1Q00872 1141 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 NPRL3Q12980 569 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 SLC17A1Q14916 467 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 KIAA0040Q15053 153 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 HIST2H2BDQ6DRA6 164 aa6.32□□□□□ -1.4
VPS4A-203ENST00000564399 RBMS3Q6XE24 437 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 C1orf229Q6ZS94 237 aaPredicted RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 EIF3MQ7L2H7 374 aaKnown RBP6.32□□□□□ -1.4
VPS4A-203ENST00000564399 GRINAQ7Z429 371 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms