RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ZNF724A8MTY0 619 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 ZNF814B7Z6K7 855 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 ZNF208O43345 1280 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 KLF4O43474 513 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 FRS3O43559 492 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 RAMP1O60894 148 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 PGM3O95394 542 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 ARAFP10398 606 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 IMPDH2P12268 514 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 FPR1P21462 350 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 IL32P24001 234 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 COPZ1P61923 177 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 SF3A3Q12874 501 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS39-203ENST00000561797 BNIP2Q12982 314 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 SFRP5Q5T4F7 317 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 ABLIM2Q6H8Q1 611 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 WBP2NLQ6ICG8 309 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 GALNT5Q7Z7M9 940 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 SERPINA11Q86U17 422 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 STEAP2Q8NFT2 490 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 HDHD5Q9BXW7 423 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 IKZF5Q9H5V7 419 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 UBTD1Q9HAC8 227 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 ZNF446Q9NWS9 450 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 LEF1Q9UJU2 399 aaPredicted RBP13.89□□□□□ -0.19
VPS39-203ENST00000561797 TRIM33Q9UPN9 1127 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 TRAPPC4Q9Y296 219 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 TRBV5-3A0A0A0MS03 114 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.88□□□□□ -0.19
VPS39-203ENST00000561797 EVPLLA8MZ36 301 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 LOXP28300 417 aaPredicted RBP13.88□□□□□ -0.19
VPS39-203ENST00000561797 SLC35A1P78382 337 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 HOXC5Q00444 222 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 CDK6Q00534 326 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 ZSWIM7Q19AV6 140 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 DEFB113Q30KQ7 82 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 PRAMEF8Q5VWM4 474 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 PRAMEF7Q5VXH5 474 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 DLEU7Q6UYE1 221 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 PIGXQ8TBF5 258 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 STON2Q8WXE9 905 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 KISS1RQ969F8 398 aaPredicted RBP13.88□□□□□ -0.19
VPS39-203ENST00000561797 MBD6Q96DN6 1003 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 TMEM120AQ9BXJ8 343 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 OR10A4Q9H209 315 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 CXXC4Q9H2H0 198 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 ZNF385DQ9H6B1 395 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 EMC3Q9P0I2 261 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 NOSIPQ9Y314 301 aaKnown RBP13.88□□□□□ -0.19
VPS39-203ENST00000561797 NDUFAF1Q9Y375 327 aa13.88□□□□□ -0.19
VPS39-203ENST00000561797 IGKV3D-15A0A087WSY6 115 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 ZNF716A6NP11 495 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 ANGPT2O15123 496 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 DNPH1O43598 174 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 LYZL6O75951 148 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 IGHV3-9P01782 118 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 GPX2P18283 190 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 CD53P19397 219 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 IDUAP35475 653 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 MAP2K6P52564 334 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 ITGADQ13349 1161 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 CEACAM7Q14002 265 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 P2RY6Q15077 328 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 PDK3Q15120 406 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 RUNDC3AQ59EK9 446 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 BEX5Q5H9J7 111 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 REEP3Q6NUK4 255 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 Q6ZT83 130 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 BHLHA15Q7RTS1 189 aaPredicted RBP13.87□□□□□ -0.19
VPS39-203ENST00000561797 DHDDSQ86SQ9 333 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 UBE2J2Q8N2K1 259 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 PLPPR2Q96GM1 343 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 ALPK1Q96QP1 1244 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 CPPED1Q9BRF8 314 aaPredicted RBP13.87□□□□□ -0.19
VPS39-203ENST00000561797 SIKE1Q9BRV8 207 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 NAA11Q9BSU3 229 aaPredicted RBP13.87□□□□□ -0.19
VPS39-203ENST00000561797 POTEKPQ9BYX7 375 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 CORO2BQ9UQ03 480 aa13.87□□□□□ -0.19
VPS39-203ENST00000561797 TEP1Q99973 2627 aaKnown RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 GPR171O14626 319 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 EIF1BO60739 113 aaKnown RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 PLAUP00749 431 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 ETS2P15036 469 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 IGHV1-2P23083 117 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 SLC6A2P23975 617 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 SCARB2Q14108 478 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 CAPRIN1Q14444 709 aaKnown RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 OR7A5Q15622 319 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 ACKR1Q16570 336 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 OTUD3Q5T2D3 398 aaPredicted RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 RETREG3Q86VR2 466 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 KRT73Q86Y46 540 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 APH1AQ96BI3 265 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 RSPO3Q9BXY4 272 aaPredicted RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 HEATR1Q9H583 2144 aaKnown RBP13.86□□□□□ -0.19
VPS39-203ENST00000561797 GMEB1Q9Y692 573 aa13.86□□□□□ -0.19
VPS39-203ENST00000561797 A8MVM7 634 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 TPST1O60507 370 aa13.85□□□□□ -0.19
VPS39-203ENST00000561797 MRPL33O75394 65 aaKnown RBP13.85□□□□□ -0.19
VPS39-203ENST00000561797 AKR7A3O95154 331 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms