RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 CASP12Q6UXS9 341 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ABHD12BQ7Z5M8 362 aaPredicted RBP8.05□□□□□ -1.12
HDDC3-204ENST00000559834 CCDC103Q8IW40 242 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 GSPT2Q8IYD1 628 aaKnown RBP8.05□□□□□ -1.12
HDDC3-204ENST00000559834 CLECL1Q8IZS7 167 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 RIBC1Q8N443 379 aaPredicted RBP8.05□□□□□ -1.12
HDDC3-204ENST00000559834 FAM71CQ8NEG0 241 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 OR8J2Q8NGG1 315 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 OR4A15Q8NGL6 344 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 TCP10LQ8TDR4 215 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 HTRA1Q92743 480 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ROPN1LQ96C74 230 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ARL5BQ96KC2 179 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ZIM3Q96PE6 472 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 MECRQ9BV79 373 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 SAP130Q9H0E3 1048 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 SERHL2Q9H4I8 314 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 MANSC1Q9H8J5 431 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 EXOSC3Q9NQT5 275 aaKnown RBP8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ASIC5Q9NY37 505 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 SLC17A7Q9P2U7 560 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ZDHHC2Q9UIJ5 367 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 PRDM4Q9UKN5 801 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 SLC9A8Q9Y2E8 581 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 VPS13CQ709C8 3753 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 ZANQ9Y493 2812 aa8.05□□□□□ -1.12
HDDC3-204ENST00000559834 HEATR1Q9H583 2144 aaKnown RBP8.05□□□□□ -1.12
HDDC3-204ENST00000559834 TMED7-TICAM2A0A0A6YYA0 188 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 CENPVL1A0A0U1RR11 272 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 NDUFS8O00217 210 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 ZNF208O43345 1280 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 CPSF4O95639 269 aaKnown RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 ITGA5P08648 1049 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 IGHV4-31P0DP07 118 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 UQCRBP14927 111 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 SRD5A1P18405 259 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 CCNA2P20248 432 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 MPGP29372 298 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 NTF4P34130 210 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 ANXA11P50995 505 aaKnown RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 POLR2HP52434 150 aaKnown RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 PHC1P78364 1004 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 TXNL4AP83876 142 aaKnown RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 SPOCK1Q08629 439 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 GNA13Q14344 377 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 MAPK14Q16539 360 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 GPAT3Q53EU6 434 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 TYW3Q6IPR3 259 aaKnown RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 FAM166AQ6J272 317 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 B3GLCTQ6Y288 498 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 ZCCHC23Q6ZST2 131 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 CMIPQ8IY22 773 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 CLEC4FQ8N1N0 589 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 WDR31Q8NA23 367 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 POMGNT2Q8NAT1 580 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 ZNF540Q8NDQ6 660 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 OR52E4Q8NGH9 312 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 RAB8BQ92930 207 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 KCNS3Q9BQ31 491 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 PIMREGQ9BSJ6 248 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 DPY30Q9C005 99 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 OR11A1Q9GZK7 315 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 PIF1Q9H611 641 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 MYOZ1Q9NP98 299 aaPredicted RBP8.04□□□□□ -1.12
HDDC3-204ENST00000559834 OBP2BQ9NPH6 170 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 SLC17A5Q9NRA2 495 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 SLC7A10Q9NS82 523 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 KCNS2Q9ULS6 477 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 TMED7Q9Y3B3 224 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 FKBP7Q9Y680 259 aa8.04□□□□□ -1.12
HDDC3-204ENST00000559834 PLCE1Q9P212 2302 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 LOC100289279A0A1B0GTE1 492 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 VSTM5A8MXK1 200 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 PDLIM1O00151 329 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 SPAG7O75391 227 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 KRT33AO76009 404 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 BPGMP07738 259 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 MYZAPP0CAP1 466 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 HNF1AP20823 631 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 CHI3L1P36222 383 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 KHKP50053 298 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 FOXG1P55316 489 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 IFFO1Q0D2I5 559 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 SLC17A1Q14916 467 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 GSTA3Q16772 222 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 DPY19L1Q2PZI1 675 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 TSPO2Q5TGU0 170 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 C9orf135Q5VTT2 229 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 LIPNQ5VXI9 398 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 TNFAIP8L2Q6P589 184 aaPredicted RBP8.03□□□□□ -1.12
HDDC3-204ENST00000559834 EMBQ6PCB8 327 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 PAQR6Q6TCH4 344 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 OLIG3Q7RTU3 272 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 AAED1Q7RTV5 226 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 NUDCD3Q8IVD9 361 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 KIRREL3Q8IZU9 778 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 ZG16BQ96DA0 208 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 FBXO17Q96EF6 278 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 NEURL3Q96EH8 262 aa8.03□□□□□ -1.12
HDDC3-204ENST00000559834 DNAJA3Q96EY1 480 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms