RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 NR1H2P55055 460 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 OR2B6P58173 313 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 MTPNP58546 118 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SLC35A1P78382 337 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SCARB2Q14108 478 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 KEAP1Q14145 624 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 CAPRIN1Q14444 709 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 DAZAP2Q15038 168 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 P2RY6Q15077 328 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 PDK3Q15120 406 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 GUSBP1Q15486 140 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 TRMT5Q32P41 509 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 ELOA3BQ3SY89 546 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 RUNDC3AQ59EK9 446 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 TMEM225Q6GV28 225 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ULK3Q6PHR2 472 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ZNF474Q6S9Z5 364 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 C5orf46Q6UWT4 87 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 DLEU7Q6UYE1 221 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ZNF836Q6ZNA1 936 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 Q6ZT83 130 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SSX8Q7RTT4 187 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 CPLX4Q7Z7G2 160 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 GALNT5Q7Z7M9 940 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 GPAT4Q86UL3 456 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 RANBP3LQ86VV4 465 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 ZNF100Q8IYN0 542 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 UBE2J2Q8N2K1 259 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 CLIP4Q8N3C7 705 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 HIPK4Q8NE63 616 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 STEAP2Q8NFT2 490 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ELOA3Q8NG57 546 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 OR8J3Q8NGG0 315 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 OR52E4Q8NGH9 312 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 OR10A6Q8NH74 314 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 NFKBIDQ8NI38 313 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 RP9Q8TA86 221 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 RNF217Q8TC41 542 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 DNAJA4Q8WW22 397 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 CNOT9Q92600 299 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 NINJ1Q92982 152 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 KISS1RQ969F8 398 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 CGREF1Q99674 301 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 KLHDC3Q9BQ90 382 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 PSD2Q9BQI7 771 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SRXN1Q9BYN0 137 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 POTEKPQ9BYX7 375 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ADAM19Q9H013 955 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 NSRP1Q9H0G5 558 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 OR10A4Q9H209 315 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 KAT8Q9H7Z6 458 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 COQ10BQ9H8M1 238 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 BCO1Q9HAY6 547 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 TMEM27Q9HBJ8 222 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 NGBQ9NPG2 151 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SLC52A3Q9NQ40 469 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 SAR1AQ9NR31 198 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 PARPBPQ9NWS1 579 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 C6orf203Q9P0P8 240 aaPredicted RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 OSGIN1Q9UJX0 560 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 AP3M1Q9Y2T2 418 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 GPR52Q9Y2T5 361 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 NOSIPQ9Y314 301 aaKnown RBP3.9□□□□□ -1.79
SNX1-205ENST00000559339 TMED7Q9Y3B3 224 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 CAPN7Q9Y6W3 813 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 ITPR2Q14571 2701 aa3.9□□□□□ -1.79
SNX1-205ENST00000559339 FREM3P0C091 2139 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 EXPH5Q8NEV8 1989 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 IGKV3D-15A0A087WSY6 115 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 TRBV5-3A0A0A0MS03 114 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 TMEM72A0PK05 275 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 FAM221AA4D161 298 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 OR6C65A6NJZ3 312 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 CCT8L1PA6NM43 557 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 NDUFAB1O14561 156 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 MRASO14807 208 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 SMAD9O15198 467 aaKnown RBP3.89□□□□□ -1.79
SNX1-205ENST00000559339 ADAM11O75078 769 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 KRT33AO76009 404 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 VAMP5O95183 116 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 AHSA1O95433 338 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 ADAP00813 363 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 C8BP07358 591 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 HOXB9P17482 250 aaPredicted RBP3.89□□□□□ -1.79
SNX1-205ENST00000559339 PSMB1P20618 241 aaKnown RBP3.89□□□□□ -1.79
SNX1-205ENST00000559339 FPR1P21462 350 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 DNASE1P24855 282 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 HOXC12P31275 282 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 IFNA8P32881 189 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 IDUAP35475 653 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 ACAA2P42765 397 aaKnown RBP3.89□□□□□ -1.79
SNX1-205ENST00000559339 RGS8P57771 180 aaPredicted RBP3.89□□□□□ -1.79
SNX1-205ENST00000559339 H3F3AP84243 136 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 TGFBR3Q03167 851 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 SF3A3Q12874 501 aaKnown RBP eCLIP3.89□□□□□ -1.79
SNX1-205ENST00000559339 KLF10Q13118 480 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 ITGADQ13349 1161 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 MFSD13AQ14CX5 517 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 OR7A5Q15622 319 aa3.89□□□□□ -1.79
SNX1-205ENST00000559339 MAPK11Q15759 364 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms