RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 CXCR1P25024 350 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 SLC1A3P43003 542 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 SLC16A1P53985 500 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 FAPQ12884 760 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TNK1Q13470 666 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TNFAIP8L3Q5GJ75 292 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 AGAP6Q5VW22 663 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF440Q8IYI8 595 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ANKFN1Q8N957 763 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 CNOT9Q92600 299 aaKnown RBP11.26□□□□□ -0.61
LINC00643-202ENST00000553426 NEUROG1Q92886 237 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TEX37Q96LM6 180 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 HS6ST2Q96MM7 605 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 OR11A1Q9GZK7 315 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 RMND5AQ9H871 391 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 BARX1Q9HBU1 254 aaPredicted RBP11.26□□□□□ -0.61
LINC00643-202ENST00000553426 NKIRAS1Q9NYS0 192 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TAS2R16Q9NYV7 291 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 CALML5Q9NZT1 146 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 UPB1Q9UBR1 384 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 POU2F3Q9UKI9 436 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 PRDM4Q9UKN5 801 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 RAB21Q9UL25 225 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 SLC9A8Q9Y2E8 581 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 TMED7Q9Y3B3 224 aa11.26□□□□□ -0.61
LINC00643-202ENST00000553426 MAGED1Q9Y5V3 778 aaPredicted RBP11.26□□□□□ -0.61
LINC00643-202ENST00000553426 ZANQ9Y493 2812 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 TLN2Q9Y4G6 2542 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GOLGA8QA0A0J9YX86 632 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM120BA0PK00 339 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 PRAMEF27A3QJZ7 478 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GOLGA8OA6NCC3 632 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GOLGA8NF8WBI6 632 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 FAAHO00519 579 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 BCAS1O75363 584 aaPredicted RBP11.25□□□□□ -0.61
LINC00643-202ENST00000553426 SLC22A3O75751 556 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 TP53P04637 393 aaPredicted RBP11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GSNP06396 782 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 KITP10721 976 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 EDNRAP25101 427 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 PTAFRP25105 342 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 EPHA3P29320 983 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 TACR3P29371 465 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 CDKN1AP38936 164 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 COPZ1P61923 177 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 TGFBR3Q03167 851 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GSTA3Q16772 222 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 ZSWIM7Q19AV6 140 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 SLC22A25Q6T423 547 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 CASP12Q6UXS9 341 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 CCDC103Q8IW40 242 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 OR52N5Q8NH56 324 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 PNPT1Q8TCS8 783 aaKnown RBP11.25□□□□□ -0.61
LINC00643-202ENST00000553426 MGARPQ8TDB4 240 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 ZBTB9Q96C00 473 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 DNAJA3Q96EY1 480 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 MDFIQ99750 246 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 INPP5KQ9BT40 448 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GRIP2Q9C0E4 1043 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 SLC38A1Q9H2H9 487 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 ARMC7Q9H6L4 198 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 WDR55Q9H6Y2 383 aaPredicted RBP11.25□□□□□ -0.61
LINC00643-202ENST00000553426 THUMPD1Q9NXG2 353 aaKnown RBP11.25□□□□□ -0.61
LINC00643-202ENST00000553426 P2RX2Q9UBL9 471 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 MALT1Q9UDY8 824 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 OSGIN1Q9UJX0 560 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 GPR45Q9Y5Y3 372 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 PRR14LQ5THK1 2151 aa11.25□□□□□ -0.61
LINC00643-202ENST00000553426 CSPG4Q6UVK1 2322 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 JMJD1CQ15652 2540 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 TMEM72A0PK05 275 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 FAM234BA2RU67 622 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 INAFM1C9JVW0 142 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 RNF223E7ERA6 249 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 AP3D1O14617 1153 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF500O60304 480 aaPredicted RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 RAMP1O60894 148 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 GPIP06744 558 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 CHRM4P08173 479 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 CDKN2CP42773 168 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 CRATP43155 626 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 CRISP3P54108 245 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 H3F3AP84243 136 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 LARS2Q15031 903 aaKnown RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 NRF1Q16656 503 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 PGGHGQ32M88 737 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 LIN52Q52LA3 116 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 PDCD4Q53EL6 469 aaKnown RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 MRPL2Q5T653 305 aaKnown RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 PAQR6Q6TCH4 344 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 SEZ6L2Q6UXD5 910 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 ATG4DQ86TL0 474 aaPredicted RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 ADAD1Q96M93 576 aaKnown RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 TRAF4Q9BUZ4 470 aaPredicted RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 REG4Q9BYZ8 158 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 SLCO5A1Q9H2Y9 848 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 MANSC1Q9H8J5 431 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 ZNF232Q9UNY5 417 aa11.24□□□□□ -0.61
LINC00643-202ENST00000553426 FN1P02751 2386 aaKnown RBP11.24□□□□□ -0.61
LINC00643-202ENST00000553426 ANK3Q12955 4377 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms