RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ACTR8Q9H981 624 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 COPS7BQ9H9Q2 264 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-206ENST00000550611 RNF122Q9H9V4 155 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 DNAJC11Q9NVH1 559 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 TAS2R10Q9NYW0 307 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 CTNNAL1Q9UBT7 734 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 PHF11Q9UIL8 331 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 FBXL2Q9UKC9 423 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 CES1P1Q9UKY3 287 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 SLC12A4Q9UP95 1085 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 LAMP3Q9UQV4 416 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 UBE2J1Q9Y385 318 aaPredicted RBP3.14□□□□□ -1.91
LIMA1-206ENST00000550611 PSAT1Q9Y617 370 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 SPACA6W5XKT8 324 aa3.14□□□□□ -1.91
LIMA1-206ENST00000550611 RAI1Q7Z5J4 1906 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 MED12Q93074 2177 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 IGHV4-30-2A0A087WSY4 118 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 LOC100653049A0A140TA62 436 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 PABPN1LA6NDY0 278 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 OR6C70A6NIJ9 312 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 GLOD5A6NK44 160 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SLC22A20A6NK97 555 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 H0YC42 278 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 STX16-NPEPL1H3BU86 382 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SAP18O00422 153 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 STX16O14662 325 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ACOX3O15254 700 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TSPAN2O60636 221 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SH3BGRLO75368 114 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 BANF1O75531 89 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 KRT34O76011 436 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TK1P04183 234 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FAM58BPP0C7Q3 252 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CTAGE8P0CG41 777 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CD1DP15813 335 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 PSMB1P20618 241 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 IVDP26440 423 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SERPINB1P30740 379 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TLX1P31314 330 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 GCKP35557 465 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CPOXP36551 454 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SSR2P43308 183 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 PPICP45877 212 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 XKP51811 444 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TPD52P55327 224 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 DSCR4P56555 118 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FAM3BP58499 235 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 RAE1P78406 368 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 VLDLRP98155 873 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 IRF8Q02556 426 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 LOXL1Q08397 574 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CHIT1Q13231 466 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CUL3Q13618 768 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FGFBP1Q14512 234 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 OR4D1Q15615 310 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 PDK4Q16654 411 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 HIST2H2ACQ16777 129 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TMEM44Q2T9K0 475 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 PRICKLE4Q2TBC4 344 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TMEM249Q2WGJ8 235 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FBXO48Q5FWF7 155 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 NCMAPQ5T1S8 102 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 STEAP4Q687X5 459 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 HIST2H2AA3Q6FI13 130 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 DGAT2L7PQ6IED9 249 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SULT1C3Q6IMI6 304 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 MED27Q6P2C8 311 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ADAMTSL2Q86TH1 951 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ZC3HC1Q86WB0 502 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 IFNEQ86WN2 208 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 MEX3DQ86XN8 651 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 GPSM1Q86YR5 675 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CPOQ8IVL8 374 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CTAGE4Q8IX94 777 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TCAIMQ8N3R3 496 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 C3orf56Q8N813 242 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 CNEP1R1Q8N9A8 125 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FADS6Q8N9I5 356 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 OR14L1PQ8NHC6 308 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 HUS1BQ8NHY5 278 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FNDC9Q8TBE3 224 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 RDH11Q8TC12 318 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SMAP2Q8WU79 429 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 NPIPB3Q92617 1050 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 NEUROG1Q92886 237 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 UBE2E3Q969T4 207 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 OMA1Q96E52 524 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ZC3HAV1LQ96H79 300 aaKnown RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF845Q96IR2 970 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 ZNF479Q96JC4 524 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 SFXN2Q96NB2 322 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 FAM210AQ96ND0 272 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TNFRSF13CQ96RJ3 184 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 HBEGFQ99075 208 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 KRT12Q99456 494 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 BAG1Q99933 345 aaPredicted RBP3.13□□□□□ -1.91
LIMA1-206ENST00000550611 DESI2Q9BSY9 194 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 NAT9Q9BTE0 207 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 LRRC1Q9BTT6 524 aa3.13□□□□□ -1.91
LIMA1-206ENST00000550611 TRAF4Q9BUZ4 470 aaPredicted RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms