RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 C20orf96Q9NUD7 363 aaPredicted RBP3.55□□□□□ -1.84
SCAF11-210ENST00000547654 VANGL2Q9ULK5 521 aa3.55□□□□□ -1.84
SCAF11-210ENST00000547654 GAB2Q9UQC2 676 aa3.55□□□□□ -1.84
SCAF11-210ENST00000547654 MRPS18CQ9Y3D5 142 aaKnown RBP3.55□□□□□ -1.84
SCAF11-210ENST00000547654 COL6A3P12111 3177 aa3.55□□□□□ -1.84
SCAF11-210ENST00000547654 ARID2Q68CP9 1835 aa3.55□□□□□ -1.84
SCAF11-210ENST00000547654 MYO5BQ9ULV0 1848 aa3.55□□□□□ -1.84
SCAF11-210ENST00000547654 SLIT2O94813 1529 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ERVK-7P63135 1459 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 TRBV11-1A0A0K0K1C0 115 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 A0A1B0GVY2 172 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 IGLON5A6NGN9 336 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF879B4DU55 563 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF701M0R085 212 aaPredicted RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RNF113AO15541 343 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RAMP1O60894 148 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 KHDRBS3O75525 346 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SERPIND1P05546 499 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 IVLP07476 585 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 PLEKP08567 350 aaPredicted RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RNH1P13489 461 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF24P17028 368 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SDC1P18827 310 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 HOXD10P28358 340 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 HMOX2P30519 316 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RRM2P31350 389 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 YWHABP31946 246 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RAB11AP62491 216 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 KLRB1Q12918 225 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RBBP5Q15291 538 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RAB11BQ15907 218 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SLC15A2Q16348 729 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 UPP1Q16831 310 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 FFAR4Q5NUL3 377 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ACER2Q5QJU3 275 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 MUC21Q5SSG8 566 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 WDR25Q64LD2 544 aaPredicted RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SLC35E4Q6ICL7 350 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SLC8B1Q6J4K2 584 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 PAQR6Q6TCH4 344 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 LRRC74BQ6ZQY2 392 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 LINC00523Q86TU6 105 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 TPRA1Q86W33 373 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ERICH1Q86X53 443 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 CATSPERDQ86XM0 798 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 LINC01561Q8N1V8 128 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 FGFRL1Q8N441 504 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 BPIFB2Q8N4F0 458 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF781Q8N8C0 355 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ATP6V0D2Q8N8Y2 350 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 MNS1Q8NEH6 495 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 OR2L3Q8NG85 312 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 OR7G2Q8NG99 324 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 OR10G7Q8NGN6 311 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 MAGEE2Q8TD90 523 aaPredicted RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 MITD1Q8WV92 249 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 IL1F10Q8WWZ1 152 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 DNAJA3Q96EY1 480 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 C12orf42Q96LP6 360 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 OR5B2Q96R09 309 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 FMO2Q99518 471 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 NIPSNAP3BQ9BS92 247 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 RAB34Q9BZG1 259 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 IL22Q9GZX6 179 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 ANKRD19PQ9H560 264 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 AGPAT3Q9NRZ7 376 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SIGLEC8Q9NYZ4 499 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 MGAT4AQ9UM21 535 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 BARX2Q9UMQ3 279 aaPredicted RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 COPS3Q9UNS2 423 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 EXOGQ9Y2C4 368 aaKnown RBP3.54□□□□□ -1.84
SCAF11-210ENST00000547654 SZT2Q5T011 3432 aa3.54□□□□□ -1.84
SCAF11-210ENST00000547654 CACNA1AO00555 2505 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 SNED1Q8TER0 1413 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 NCOA3Q9Y6Q9 1424 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 MAP3K5Q99683 1374 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 A0A087WW49 117 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.53□□□□□ -1.84
SCAF11-210ENST00000547654 IGKV3D-20A0A0C4DH25 116 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 A0A1W2PPE3 182 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 NPIPB9F8W1W9 429 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 K7EQD1 137 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 HIP1O00291 1037 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 WWP2O00308 870 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 RS1O15537 224 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF749O43361 778 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 EDIL3O43854 480 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 OR2J3O76001 311 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 STAG3L2P0CL84 134 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 CDH5P33151 784 aaPredicted RBP3.53□□□□□ -1.84
SCAF11-210ENST00000547654 MAP2K2P36507 400 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 MMP12P39900 470 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 CDK16Q00536 496 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 ZNF177Q13360 481 aaPredicted RBP3.53□□□□□ -1.84
SCAF11-210ENST00000547654 MTF1Q14872 753 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 FCN2Q15485 313 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 NDUFA9Q16795 377 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 HNRNPA1L2Q32P51 320 aaKnown RBP3.53□□□□□ -1.84
SCAF11-210ENST00000547654 VPS26BQ4G0F5 336 aa3.53□□□□□ -1.84
SCAF11-210ENST00000547654 LCE3CQ5T5A8 94 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms