RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ARL8AQ96BM9 186 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 ARL5BQ96KC2 179 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 MYCBPQ99417 103 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 TRAF4Q9BUZ4 470 aaPredicted RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 DPY30Q9C005 99 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 CTPS2Q9NRF8 586 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 SERINC1Q9NRX5 453 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 EXD2Q9NVH0 621 aa7.47□□□□□ -1.21
USP28-215ENST00000545608 CISD1Q9NZ45 108 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 NOP53Q9NZM5 478 aaKnown RBP7.47□□□□□ -1.21
USP28-215ENST00000545608 VPS13CQ709C8 3753 aa7.46□□□□□ -1.21
USP28-215ENST00000545608 IGKV3D-15A0A087WSY6 115 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 PRSS51A0A1B0GVH4 220 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 OR5H1A6NKK0 313 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 CLDN24A6NM45 220 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ZNF716A6NP11 495 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ANKRD28O15084 1053 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 POLR3GO15318 223 aaPredicted RBP7.46□□□□□ -1.22
USP28-215ENST00000545608 KIAA0513O60268 411 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ADAM11O75078 769 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 GUSBP08236 651 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 TFPIP10646 304 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 GGT1P19440 569 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 COX5AP20674 150 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 UQCRC2P22695 453 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 RYKP34925 604 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 APOBEC1P41238 236 aaKnown RBP7.46□□□□□ -1.22
USP28-215ENST00000545608 FOXG1P55316 489 aaPredicted RBP7.46□□□□□ -1.22
USP28-215ENST00000545608 ABCE1P61221 599 aaKnown RBP7.46□□□□□ -1.22
USP28-215ENST00000545608 CHRNEQ04844 493 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 CASP8Q14790 479 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 PDK3Q15120 406 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 CHI3L2Q15782 390 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 TIMM23BQ5SRD1 257 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 AP1ARQ63HQ0 302 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 SAXO2Q658L1 398 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ABLIM2Q6H8Q1 611 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 FRRS1Q6ZNA5 592 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 DNM1P46Q6ZS02 220 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 HDXQ7Z353 690 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 DTX2Q86UW9 622 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ADGRG3Q86Y34 549 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 FAM71CQ8NEG0 241 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ZNF563Q8TA94 476 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 STK35Q8TDR2 534 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 AENQ8WTP8 325 aaKnown RBP7.46□□□□□ -1.22
USP28-215ENST00000545608 ROPN1LQ96C74 230 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 MUCL1Q96DR8 90 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ZIM3Q96PE6 472 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 CCDC106Q9BWC9 280 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 OR11A1Q9GZK7 315 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ZNF446Q9NWS9 450 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 PCDHGB4Q9UN71 923 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 B3GALT5Q9Y2C3 310 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 WDR45Q9Y484 360 aa7.46□□□□□ -1.22
USP28-215ENST00000545608 ALPK2Q86TB3 2170 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 GOLGA8QA0A0J9YX86 632 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 A0A1W2PR80 420 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 GOLGA8OA6NCC3 632 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 E7EQL1 145 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 GOLGA8NF8WBI6 632 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 AP3D1O14617 1153 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 ABCD4O14678 606 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 RAD51DO75771 328 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 PMS2P2O95744 297 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SERPINE1P05121 402 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 GSTP1P09211 210 aaKnown RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 CCNA2P20248 432 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 IDH2P48735 452 aaKnown RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 CDH11P55287 796 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 OR2B6P58173 313 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 CSNK2A1P68400 391 aaPredicted RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 KCNJ10P78508 379 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 ETFDHQ16134 617 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SPANXN4Q5MJ08 99 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 ATAD3BQ5T9A4 648 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 ANXA8L1Q5VT79 327 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 FBXW9Q5XUX1 488 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 EMBQ6PCB8 327 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 GRINAQ7Z429 371 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 P2RY8Q86VZ1 359 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 CCDC103Q8IW40 242 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 OR52N5Q8NH56 324 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SLC25A43Q8WUT9 341 aaPredicted RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 CNOT9Q92600 299 aaKnown RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 APH1AQ96BI3 265 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 NEURL3Q96EH8 262 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 TEX37Q96LM6 180 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SORT1Q99523 831 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 TMEM109Q9BVC6 243 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 POLE3Q9NRF9 147 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 CHRNA9Q9UGM1 479 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.45□□□□□ -1.22
USP28-215ENST00000545608 SLC35A3Q9Y2D2 325 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 NOSIPQ9Y314 301 aaKnown RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 RRP15Q9Y3B9 282 aaKnown RBP7.45□□□□□ -1.22
USP28-215ENST00000545608 RAP2CQ9Y3L5 183 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SLC25A15Q9Y619 301 aa7.45□□□□□ -1.22
USP28-215ENST00000545608 SONP18583 2426 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms