RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	ATP6V1G2-DDX39B	F2Z307	99 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	PSMD9	O00233	223 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	TSPAN4	O14817	238 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	BRINP1	O60477	761 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	HCN1	O60741	890 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	DRD1	P21728	446 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	IL32	P24001	234 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	CRYZ	Q08257	329 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	DSG2	Q14126	1118 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	POU4F3	Q15319	338 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ANGPT1	Q15389	498 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	NPSR1	Q6W5P4	371 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SDR9C7	Q8NEX9	313 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZDHHC1	Q8WTX9	485 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	RFK	Q969G6	155 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZNF224	Q9NZL3	707 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SIGLEC7	Q9Y286	467 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	TP53BP1	Q12888	1972 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	HOXC4	P09017	264 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SHC1	P29353	583 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	GFER	P55789	205 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	OR12D2	P58182	307 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	CCIN	Q13939	588 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	KCNAB1	Q14722	419 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	NKAIN2	Q5VXU1	208 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	RNF44	Q7L0R7	432 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	OR52L1	Q8NGH7	329 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	OR4C3	Q8NH37	302 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	OR4K13	Q8NH42	304 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	LHFPL5	Q8TAF8	219 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	AKAP1	Q92667	903 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZMYND19	Q96E35	227 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	GPR137	Q96N19	417 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ATF6B	Q99941	703 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	LRRC61	Q9BV99	259 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SCML1	Q9UN30	329 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286		A0A0B4J203	849 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SPTY2D1-AS1	A0A0U1RR47	76 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286		J3QLW9	94 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	STK25	O00506	426 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	TNFRSF10C	O14798	259 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SLC43A1	O75387	559 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZNF19	P17023	458 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	S1PR1	P21453	382 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZNF10	P21506	573 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	RPS4Y1	P22090	263 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	TALDO1	P37837	337 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	NAA10	P41227	235 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	CCDC85B	Q15834	202 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	AMZ1	Q400G9	498 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	PRPF38B	Q5VTL8	546 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	OTP	Q5XKR4	325 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZNF321P	Q8N8H1	164 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	RCBTB1	Q8NDN9	531 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZPLD1	Q8TCW7	415 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	ZNF431	Q8TF32	576 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	PCNP	Q8WW12	178 aa	Known RBP	13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	LYRM4	Q9HD34	91 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	DUSP22	Q9NRW4	184 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286	SPACA6	W5XKT8	324 aa		13.6	□□□□□ -0.23
DDX55-209	ENST00000542286		A0A087WV48	116 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	DAPL1	A0PJW8	107 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	INMT-MINDY4	F8WBC2	141 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	PAH	P00439	452 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	IGHA1	P01876	353 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MYF5	P13349	255 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	GRPR	P30550	384 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	STX4	Q12846	297 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	IL18	Q14116	193 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	EIPR1	Q53HC9	387 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	RNASE12	Q5GAN4	147 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	IDNK	Q5T6J7	187 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	KIRREL2	Q6UWL6	708 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	CNTRL	Q7Z7A1	2325 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	GJD3	Q8N144	294 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	PHF21A	Q96BD5	680 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	KCNN2	Q9H2S1	579 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	ANKRD19P	Q9H560	264 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	FOLH1B	Q9HBA9	442 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	POT1	Q9NUX5	634 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MMP17	Q9ULZ9	603 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MGAT4A	Q9UM21	535 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	ERVK-19	Q9WJR5	959 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	EXOG	Q9Y2C4	368 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	GSTK1	Q9Y2Q3	226 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MED31	Q9Y3C7	131 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	THADA	Q6YHU6	1953 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	AKAP8	O43823	692 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	HLA-DQB1	P01920	261 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	THBS1	P07996	1170 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	BMP8B	P34820	402 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MRPS21	P82921	87 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	ALG10B	Q5I7T1	473 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MEPCE	Q7L2J0	689 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	BMP8A	Q7Z5Y6	402 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	OAF	Q86UD1	273 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	MCAT	Q8IVS2	390 aa	Known RBP	13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	ACBD7	Q8N6N7	88 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	OR5J2	Q8NH18	312 aa		13.59	□□□□□ -0.23
DDX55-209	ENST00000542286	RIT1	Q92963	219 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms