RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 PFN4Q8NHR9 129 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 SLC7A13Q8TCU3 470 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 DNAJA4Q8WW22 397 aaPredicted RBP8.43□□□□□ -1.06
DDX55-208ENST00000541259 NR4A3Q92570 626 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 ZBTB8AQ96BR9 441 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 CENPNQ96H22 339 aaPredicted RBP8.43□□□□□ -1.06
DDX55-208ENST00000541259 MRGPRX4Q96LA9 322 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 EPYCQ99645 322 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 OR11A1Q9GZK7 315 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 SLC25A18Q9H1K4 315 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 TMEM185BQ9H7F4 350 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 ZDHHC11Q9H8X9 412 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 REEP1Q9H902 201 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 RNPEPL1Q9HAU8 725 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 STX18Q9P2W9 335 aaKnown RBP8.43□□□□□ -1.06
DDX55-208ENST00000541259 SHANK1Q9Y566 2161 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 COL6A6A6NMZ7 2263 aa8.43□□□□□ -1.06
DDX55-208ENST00000541259 ALPK2Q86TB3 2170 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 IGSF10Q6WRI0 2623 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SH3PXD2BA1X283 911 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 C7orf72A4D263 438 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 NPIPA5E9PKD4 350 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 H3BML4 177 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 PDLIM1O00151 329 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ACOT7O00154 380 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 KPNA4O00629 521 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 TFECO14948 347 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 E2F6O75461 281 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 PNMTP11086 282 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 PEPDP12955 493 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SNRPBP14678 240 aaKnown RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 ZNF24P17028 368 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SHC1P29353 583 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 DNAJA1P31689 397 aaKnown RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 IFNA8P32881 189 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 EIF1P41567 113 aaKnown RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 HTR3AP46098 478 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 GFRA1P56159 465 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SMIM11AP58511 58 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ALDH6A1Q02252 535 aaKnown RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 C19orf57Q0VDD7 668 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 MICAQ29983 383 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 GLYR1Q49A26 553 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 DCST1Q5T197 706 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 LPCAT4Q643R3 524 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 TTC33Q6PID6 262 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 TRILQ7L0X0 811 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 EPHX4Q8IUS5 362 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ALDH16A1Q8IZ83 802 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 OR4K5Q8NGD3 323 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 OR9Q2Q8NGE9 314 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 TMEM239Q8WW34 195 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ACOT11Q8WXI4 607 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 MPP4Q96JB8 637 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SFXN2Q96NB2 322 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 PIGQQ9BRB3 760 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 BDH2Q9BUT1 245 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ZNF426Q9BUY5 554 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ANKRD19PQ9H560 264 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 C12orf10Q9HB07 376 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 MEPEQ9NQ76 525 aaPredicted RBP8.42□□□□□ -1.06
DDX55-208ENST00000541259 C20orf141Q9NUB4 165 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 QPCTLQ9NXS2 382 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SELENONQ9NZV5 590 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 STOML1Q9UBI4 398 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 TNFRSF10DQ9UBN6 386 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 PRDM4Q9UKN5 801 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 TMCC3Q9ULS5 477 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 OAZ3Q9UMX2 235 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 NPIPA1Q9UND3 350 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 ARHGAP21Q5T5U3 1957 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 MED12LQ86YW9 2145 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 SPTA1P02549 2419 aa8.42□□□□□ -1.06
DDX55-208ENST00000541259 LRRN3E7EW58 273 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 H0YC42 278 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 LCE2BO14633 110 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 NPIPB7O75200 414 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 CCNB2O95067 398 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 ZNF17P17021 662 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 ZNF23P17027 643 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 BMP7P18075 431 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 FUT1P19526 365 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 FPR1P21462 350 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 CBLP22681 906 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 ADH6P28332 368 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 SFTPDP35247 375 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 SUCLG1P53597 346 aaKnown RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 TPD52P55327 224 aaPredicted RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 CLDN15P56746 228 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 HSF1Q00613 529 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 SLC34A1Q06495 639 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 LTBQ06643 244 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 KLRB1Q12918 225 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 INAQ16352 499 aa8.41□□□□□ -1.06
DDX55-208ENST00000541259 TMEM176BQ3YBM2 270 aaPredicted RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 PRR30Q53SZ7 412 aaPredicted RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 ARSJQ5FYB0 599 aaPredicted RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 ZNF770Q6IQ21 691 aaPredicted RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 SHQ1Q6PI26 577 aaKnown RBP8.41□□□□□ -1.06
DDX55-208ENST00000541259 ZNF730Q6ZMV8 503 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms