RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 HIPK1Q86Z02 1210 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NRMQ8IXM6 262 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SVOPLQ8N434 492 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ATP6V1C2Q8NEY4 427 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OR10G2Q8NGC3 310 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PFN4Q8NHR9 129 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NRG4Q8WWG1 115 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RELTQ969Z4 430 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SFXN2Q96NB2 322 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TMEM43Q9BTV4 400 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OR11A1Q9GZK7 315 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TSPAN10Q9H1Z9 355 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC6A15Q9H2J7 730 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ACKR4Q9NPB9 350 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC6A5Q9Y345 797 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZNF337Q9Y3M9 751 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MYO18BQ8IUG5 2567 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PCNX3Q9H6A9 2034 aa17.07■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OR10H3O60404 316 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 WISP2O76076 250 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OPN1LWP04000 364 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ELK4P28324 431 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PEX2P28328 305 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 GFRA1P56159 465 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SELENBP1Q13228 472 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 LRRC36Q1X8D7 754 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CMPK2Q5EBM0 449 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OTUD3Q5T2D3 398 aaPredicted RBP17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 C1QL3Q5VWW1 255 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RRM2BQ7LG56 351 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RNF113BQ8IZP6 322 aaKnown RBP17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TEX19Q8NA77 164 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 EME1Q96AY2 570 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TMEM185BQ9H7F4 350 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SERINC1Q9NRX5 453 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 C20orf141Q9NUB4 165 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 STOML1Q9UBI4 398 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MED31Q9Y3C7 131 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 LIPGQ9Y5X9 500 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RELNP78509 3460 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 A8MVM7 634 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 H3BML4 177 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZNF208O43345 1280 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NPIPB7O75200 414 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SHC1P29353 583 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ALDH6A1Q02252 535 aaKnown RBP17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 C3orf33Q6P1S2 294 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PGBD2Q6P3X8 592 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZER1Q7Z7L7 766 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MEX3DQ86XN8 651 aaKnown RBP17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SIAH3Q8IW03 269 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 KTI12Q96EK9 354 aaPredicted RBP17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 DNAJA3Q96EY1 480 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC29A1Q99808 456 aa17.06■□□□□ 0.32
TNFRSF1A-213ENST00000540022 GASTP01350 101 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OMPP47874 163 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 MAP2K6P52564 334 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PRKCDQ05655 676 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CRYZQ08257 329 aaKnown RBP17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 KLRB1Q12918 225 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 OGFRL1Q5TC84 451 aaPredicted RBP17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TRILQ7L0X0 811 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CBR4Q8N4T8 237 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 STK35Q8TDR2 534 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ARL5BQ96KC2 179 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 FEVQ99581 238 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PSD2Q9BQI7 771 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 C9orf16Q9BUW7 83 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC19A3Q9BZV2 496 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 GABARAPL1Q9H0R8 117 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 COQ10BQ9H8M1 238 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SMURF2Q9HAU4 748 aa17.05■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ARRDC5A6NEK1 342 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ENO4A6NNW6 628 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SOCS2O14508 198 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 EI24O14681 340 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 IFI30P13284 250 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CBLP22681 906 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CHMP24386 653 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 STARP49675 285 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 CTBP2P56545 445 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RAC1P63000 192 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PRR30Q53SZ7 412 aaPredicted RBP17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SYT14P1Q58G82 188 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 ZBTB49Q6ZSB9 765 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 LINC00471Q8N535 108 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 AQP11Q8NBQ7 271 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NEIL3Q8TAT5 605 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 PIGXQ8TBF5 258 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SLC25A43Q8WUT9 341 aaPredicted RBP17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SDCCAG3Q96C92 435 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 FAM46AQ96IP4 442 aaKnown RBP17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 GPA33Q99795 319 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NIPSNAP1Q9BPW8 284 aa17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 SPIN1Q9Y657 262 aaPredicted RBP17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 RP1L1Q8IWN7 2480 aaPredicted RBP17.04■□□□□ 0.32
TNFRSF1A-213ENST00000540022 TRGV5A0A0B4J1U4 118 aa17.03■□□□□ 0.32
TNFRSF1A-213ENST00000540022 LRRN3E7EW58 273 aa17.03■□□□□ 0.32
TNFRSF1A-213ENST00000540022 NPIPA5E9PKD4 350 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms