RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 OR4F3Q6IEY1 312 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 FRRS1Q6ZNA5 592 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 ZCCHC23Q6ZST2 131 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 OLIG3Q7RTU3 272 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 CCDC103Q8IW40 242 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 OR8J2Q8NGG1 315 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 OR52E4Q8NGH9 312 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 KIF18AQ8NI77 898 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 ZNF563Q8TA94 476 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 AGR3Q8TD06 166 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 TUBGCP3Q96CW5 907 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 OR11A1Q9GZK7 315 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 OR51I1Q9H343 314 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 SLC17A5Q9NRA2 495 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 PARPBPQ9NWS1 579 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 TMEM181Q9P2C4 612 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 PCDHGB4Q9UN71 923 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 SLC9A8Q9Y2E8 581 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 WDR45Q9Y484 360 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 FLVCR1Q9Y5Y0 555 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 PMF1-BGLAPU3KQ54 211 aa11.89□□□□□ -0.51
SS18-204ENST00000539244 NDUFS8O00217 210 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 ZNF208O43345 1280 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 EIF1BO60739 113 aaKnown RBP11.88□□□□□ -0.51
SS18-204ENST00000539244 SCN2BO60939 215 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 SKAP2O75563 359 aaPredicted RBP11.88□□□□□ -0.51
SS18-204ENST00000539244 IGFBP5P24593 272 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 HTR3AP46098 478 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 MAP2K6P52564 334 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 PHC1P78364 1004 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 KCNJ10P78508 379 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 SLC25A3Q00325 362 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 TGFBR3Q03167 851 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 SWI5Q1ZZU3 235 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 PGS1Q32NB8 556 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 ATAD3BQ5T9A4 648 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 CASP12Q6UXS9 341 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 CLEC4FQ8N1N0 589 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 ZIM3Q96PE6 472 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 SLC7A10Q9NS82 523 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 NOP53Q9NZM5 478 aaKnown RBP11.88□□□□□ -0.51
SS18-204ENST00000539244 SLC17A7Q9P2U7 560 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 ATP23Q9Y6H3 246 aa11.88□□□□□ -0.51
SS18-204ENST00000539244 OR12D1P0DN82 309 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 UQCRC2P22695 453 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 MPGP29372 298 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 RYKP34925 604 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 OR2B6P58173 313 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 SLC35A1P78382 337 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 SLC17A1Q14916 467 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 MST1LQ2TV78 715 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 TSPO2Q5TGU0 170 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 SAXO2Q658L1 398 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 RIBC1Q8N443 379 aaPredicted RBP11.87□□□□□ -0.51
SS18-204ENST00000539244 ARFGAP2Q8N6H7 521 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 TCP10LQ8TDR4 215 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 XAGE5Q8WWM1 108 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 PMM1Q92871 262 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 TMEM45BQ96B21 275 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 ROPN1LQ96C74 230 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 ZG16BQ96DA0 208 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 C1QTNF6Q9BXI9 259 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.87□□□□□ -0.51
SS18-204ENST00000539244 UPB1Q9UBR1 384 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 KCNS2Q9ULS6 477 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 NBEAL1Q6ZS30 2694 aa11.87□□□□□ -0.51
SS18-204ENST00000539244 TMED7-TICAM2A0A0A6YYA0 188 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 PRSS51A0A1B0GVH4 220 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 PRAMEF27A3QJZ7 478 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 ATP6V1G2-DDX39BF2Z307 99 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 FAAHO00519 579 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 LY6HO94772 140 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 NUDT17P0C025 328 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 IMPDH2P12268 514 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 SRD5A1P18405 259 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 NR4A2P43354 598 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 IDH2P48735 452 aaKnown RBP11.86□□□□□ -0.51
SS18-204ENST00000539244 PDLIM4P50479 330 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 PRPS1P60891 318 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 FAM166AQ6J272 317 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 TNFAIP8L2Q6P589 184 aaPredicted RBP11.86□□□□□ -0.51
SS18-204ENST00000539244 PAQR6Q6TCH4 344 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 CMIPQ8IY22 773 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 ARIH2OSQ8N7S6 290 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 OR4A15Q8NGL6 344 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.86□□□□□ -0.516e-8■■■■□ 26.7
SS18-204ENST00000539244 RAB8BQ92930 207 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 DDIT4LQ96D03 193 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 NEURL3Q96EH8 262 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 DNAJA3Q96EY1 480 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 NAA11Q9BSU3 229 aaPredicted RBP11.86□□□□□ -0.51
SS18-204ENST00000539244 C19orf24Q9BVV8 132 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 PRR14Q9BWN1 585 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 PIF1Q9H611 641 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 MYOZ1Q9NP98 299 aaPredicted RBP11.86□□□□□ -0.51
SS18-204ENST00000539244 OBP2BQ9NPH6 170 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 OSGIN1Q9UJX0 560 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 TMED7Q9Y3B3 224 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 FKBP7Q9Y680 259 aa11.86□□□□□ -0.51
SS18-204ENST00000539244 TMEM72A0PK05 275 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms