RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PRAMEF25A6NGN4 478 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 SERINC4A6NH21 518 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 NDUFB5O43674 189 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 CSTAP01040 98 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 UMPSP11172 480 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 TBXA2RP21731 343 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 PRKAR1BP31321 381 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 RNF144AP50876 292 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 SELENOWP63302 87 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 KCNJ10P78508 379 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 CHRNB3Q05901 458 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF141Q15928 474 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 ZSWIM7Q19AV6 140 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 IFI44LQ53G44 452 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF836Q6ZNA1 936 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 C20orf204Q6ZNR8 217 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 CBLL1Q75N03 491 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 TMCO5AQ8N6Q1 288 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 OR4C3Q8NH37 302 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 HGDQ93099 445 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 SLC47A1Q96FL8 570 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 PYURFQ96I23 114 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 HSH2DQ96JZ2 352 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 WFIKKN1Q96NZ8 548 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 HS3ST6Q96QI5 342 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 NODALQ96S42 347 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 DOHHQ9BU89 302 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 OSBPL11Q9BXB4 747 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 CALHM2Q9HA72 323 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 HHATLQ9HCP6 504 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 SLC35A3Q9Y2D2 325 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 SH3GLB1Q9Y371 365 aa11.22□□□□□ -0.61
CLSTN3-208ENST00000538933 A0A1W2PQD3 144 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 TLX2O43763 284 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 PRKD3O94806 890 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 ANGPTL1O95841 491 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 GPIP06744 558 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 FESP07332 822 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 NGFRP08138 427 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 UBL4AP11441 157 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 RPS4Y1P22090 263 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 KCNJ5P48544 419 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 MASP1P48740 699 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 CCR4P51679 360 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 NR1H2P55055 460 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 RGS8P57771 180 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 ACTR3P61158 418 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 FGFBP1Q14512 234 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 NHSL2Q5HYW2 709 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 MRPL2Q5T653 305 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 PRAMEF20Q5VT98 475 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 RNF220Q5VTB9 566 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 DESI1Q6ICB0 168 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 DHRS4L2Q6PKH6 230 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 ENPP6Q6UWR7 440 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 LUZP2Q86TE4 346 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 MISPQ8IVT2 679 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 CMIPQ8IY22 773 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 PM20D2Q8IYS1 436 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 MEIOBQ8N635 442 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 OR52E4Q8NGH9 312 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 VANGL1Q8TAA9 524 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 GEMIN6Q8WXD5 167 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 ZG16BQ96DA0 208 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 WDYHV1Q96HA8 205 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 TRIB1Q96RU8 372 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 PIGQQ9BRB3 760 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 DENND2DQ9H6A0 471 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 YY1AP1Q9H869 796 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 FLRT3Q9NZU0 649 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 CNIH4Q9P003 139 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 PPP4R1LQ9P1A2 415 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 NDRG3Q9UGV2 375 aa11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 BOKQ9UMX3 212 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 RRP15Q9Y3B9 282 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-208ENST00000538933 A8MXE2 369 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 ALG1L2C9J202 215 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 RNF223E7ERA6 249 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 ZNF264O43296 627 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CD5LO43866 347 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 TRIM3O75382 744 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 GCM2O75603 506 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 NUDT14O95848 222 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 IFNW1P05000 195 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 UBTFL6P0CB48 400 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 TMIGD3P0DMS9 266 aaPredicted RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 UQCRBP14927 111 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 HOXB6P17509 224 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CRYGSP22914 178 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 IFNA8P32881 189 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 CCNIQ14094 377 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 SF3B4Q15427 424 aaKnown RBP eCLIP11.2□□□□□ -0.623e-6■□□□□ 8.1
CLSTN3-208ENST00000538933 MAPK14Q16539 360 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 DUSP7Q16829 419 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 TBCELQ5QJ74 424 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 DCST1Q5T197 706 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 SLC30A6Q6NXT4 461 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 ZNF550Q7Z398 422 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 VTCN1Q7Z7D3 282 aa11.2□□□□□ -0.62
CLSTN3-208ENST00000538933 MARCH3Q86UD3 253 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms