RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CPPED1Q9BRF8 314 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 TMEM120AQ9BXJ8 343 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ACTR6Q9GZN1 396 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 OR10A4Q9H209 315 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 CACYBPQ9HB71 228 aaKnown RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 FANCFQ9NPI8 374 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 TMEM181Q9P2C4 612 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 LEF1Q9UJU2 399 aaPredicted RBP13.13□□□□□ -0.31
USP28-204ENST00000537642 TRAPPC4Q9Y296 219 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 GPR52Q9Y2T5 361 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 HIVEP1P15822 2718 aa13.13□□□□□ -0.31
USP28-204ENST00000537642 ROS1P08922 2347 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 IGKV3D-15A0A087WSY6 115 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ZNF716A6NP11 495 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 C5orf58C9J3I9 102 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 FRS3O43559 492 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 DNPH1O43598 174 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 RAMP1O60894 148 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ATE1O95260 518 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ETS2P15036 469 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 OR3A2P47893 321 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 MAP2K6P52564 334 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 CDK6Q00534 326 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 PDK3Q15120 406 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 TSC22D1Q15714 1073 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 RUNDC3AQ59EK9 446 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 METTL21CQ5VZV1 264 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 WBP2NLQ6ICG8 309 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.12□□□□□ -0.31
USP28-204ENST00000537642 CADM2Q8N3J6 435 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 DPP10Q8N608 796 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ZHX1-C8orf76Q96EF9 292 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 HS3ST6Q96QI5 342 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 FOXC2Q99958 501 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 TMEM38AQ9H6F2 299 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 ARMC7Q9H6L4 198 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 PRSS50Q9UI38 385 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 PRDM4Q9UKN5 801 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 EDARQ9UNE0 448 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 NDUFAF1Q9Y375 327 aa13.12□□□□□ -0.31
USP28-204ENST00000537642 VPS13CQ709C8 3753 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 EVPLLA8MZ36 301 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 KLF4O43474 513 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 ADAP00813 363 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 RAF1P04049 648 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 CXCR1P25024 350 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 COPZ1P61923 177 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 H3F3AP84243 136 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 HOXC5Q00444 222 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 BNIP2Q12982 314 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 ADRM1Q16186 407 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 SFRP5Q5T4F7 317 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 CGB2Q6NT52 195 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 REEP3Q6NUK4 255 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 GALNT5Q7Z7M9 940 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 DHDDSQ86SQ9 333 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 COMTD1Q86VU5 262 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 CCDC103Q8IW40 242 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 PIGXQ8TBF5 258 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 TSPEARQ8WU66 669 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 SLC35B4Q969S0 331 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 C3orf49Q96BT1 292 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 S100PBPQ96BU1 408 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 MBD6Q96DN6 1003 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 HDHD5Q9BXW7 423 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 CXXC4Q9H2H0 198 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 FGFR1OP2Q9NVK5 253 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 CORO2BQ9UQ03 480 aa13.11□□□□□ -0.31
USP28-204ENST00000537642 RAI1Q7Z5J4 1906 aaPredicted RBP13.1□□□□□ -0.31
USP28-204ENST00000537642 ANGPT2O15123 496 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 FPR1P21462 350 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 PRKAR1BP31321 381 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 NTF4P34130 210 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 SLC16A1P53985 500 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 SLC35A1P78382 337 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 SCARB2Q14108 478 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 KEAP1Q14145 624 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 SELPLGQ14242 412 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 P2RY6Q15077 328 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 Q6ZT83 130 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 ATG4DQ86TL0 474 aaPredicted RBP13.1□□□□□ -0.31
USP28-204ENST00000537642 WFDC8Q8IUA0 241 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 STEAP2Q8NFT2 490 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 ANKRD27Q96NW4 1050 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 CGREF1Q99674 301 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 POTEKPQ9BYX7 375 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 EMC3Q9P0I2 261 aa13.1□□□□□ -0.31
USP28-204ENST00000537642 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.09□□□□□ -0.31
USP28-204ENST00000537642 LIPT2A6NK58 231 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 TMEM229AB2RXF0 380 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 DSCAMO60469 2012 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 TPST1O60507 370 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 EIF1BO60739 113 aaKnown RBP13.09□□□□□ -0.31
USP28-204ENST00000537642 TROVE2P10155 538 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP28-204ENST00000537642 CD53P19397 219 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 SLC6A2P23975 617 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 IL32P24001 234 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 IDUAP35475 653 aa13.09□□□□□ -0.31
USP28-204ENST00000537642 MTPNP58546 118 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms