RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DSN1Q9H410 356 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 CCNB1IP1Q9NPC3 277 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 CLN6Q9NWW5 311 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 ZNF226Q9NYT6 803 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 HEATR5AQ86XA9 2040 aa19.26■□□□□ 0.67
VPS28-212ENST00000530836 WBP4O75554 376 aaKnown RBP19.25■□□□□ 0.67
VPS28-212ENST00000530836 IGFBP1P08833 259 aaPredicted RBP19.25■□□□□ 0.67
VPS28-212ENST00000530836 PTGDSP41222 190 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 MAP2K6P52564 334 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SOX8P57073 446 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SLC25A30Q5SVS4 291 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 C5orf46Q6UWT4 87 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 OAFQ86UD1 273 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 FANK1Q8TC84 345 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 PAQR8Q8TEZ7 354 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 APH1BQ8WW43 257 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 IPCEF1Q8WWN9 437 aaPredicted RBP19.25■□□□□ 0.67
VPS28-212ENST00000530836 TSSK6Q9BXA6 273 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 GALNT9Q9HCQ5 603 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SIGLEC7Q9Y286 467 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 NBEAQ8NFP9 2946 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 ANKRD33BA6NCL7 494 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 CDK2AP1O14519 115 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 HMGN1P05114 100 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 ATP6V1B1P15313 513 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 PCYT1AP49585 367 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 CCL11P51671 97 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 ANKDD1AQ495B1 522 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SLC22A10Q63ZE4 541 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 FCRLBQ6BAA4 426 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 ZNF773Q6PK81 442 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SMARCD3Q6STE5 483 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 MEX3DQ86XN8 651 aaKnown RBP19.25■□□□□ 0.67
VPS28-212ENST00000530836 LIPHQ8WWY8 451 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 UBE2FQ969M7 185 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 PLA2G12AQ9BZM1 189 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 OR52D1Q9H346 318 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 SH2D2AQ9NP31 389 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 MED17Q9NVC6 651 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 OSGIN1Q9UJX0 560 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 BAIAP2Q9UQB8 552 aa19.25■□□□□ 0.67
VPS28-212ENST00000530836 KMT2BQ9UMN6 2715 aaPredicted RBP19.24■□□□□ 0.67
VPS28-212ENST00000530836 ETV2O00321 342 aaPredicted RBP19.24■□□□□ 0.67
VPS28-212ENST00000530836 GNB5O14775 395 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 PTP4A3O75365 173 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 SLC25A12O75746 678 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 SMNDC1O75940 238 aaKnown RBP eCLIP19.24■□□□□ 0.67
VPS28-212ENST00000530836 FMO3P31513 532 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 ZBED5Q49AG3 693 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 ACER2Q5QJU3 275 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 TMEM201Q5SNT2 666 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 MEDAGQ5VYS4 303 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 RTL4Q6ZR62 310 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 GALNT16Q8N428 558 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 OR8D4Q8NGM9 314 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 THOC3Q96J01 351 aaKnown RBP19.24■□□□□ 0.67
VPS28-212ENST00000530836 ANGPTL4Q9BY76 406 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 LHX6Q9UPM6 363 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 ZNF337Q9Y3M9 751 aa19.24■□□□□ 0.67
VPS28-212ENST00000530836 IGKV1D-42A0A075B6H8 117 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 CEACAM4O75871 244 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 OR7A10O76100 309 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 PTNP21246 168 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 APOBEC1P41238 236 aaKnown RBP19.23■□□□□ 0.67
VPS28-212ENST00000530836 ZNF41P51814 821 aaPredicted RBP19.23■□□□□ 0.67
VPS28-212ENST00000530836 TOMM34Q15785 309 aaPredicted RBP19.23■□□□□ 0.67
VPS28-212ENST00000530836 OCLNQ16625 522 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 CYP4Z2PQ8N1L4 340 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 FAM26EQ8N5C1 309 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 ARHGAP9Q9BRR9 750 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 DUSP21Q9H596 190 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 PTGES2Q9H7Z7 377 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 VCX3AQ9NNX9 186 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 TVP23BQ9NYZ1 205 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 ABI3Q9P2A4 366 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 CACNA1GO43497 2377 aa19.23■□□□□ 0.67
VPS28-212ENST00000530836 ATMQ13315 3056 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 A6NHS1 94 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 A6NL46 340 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 FAM47E-STBD1D6RA91 191 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 ERVH48-1M5A8F1 160 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 GMFGO60234 142 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 MAN1A2O60476 641 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 FAM20BO75063 409 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SNX4O95219 450 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 TFAP2AP05549 437 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 PRKCAP17252 672 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 FUT1P19526 365 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 EFNB1P98172 346 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SNAPC1Q16533 368 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 PGGHGQ32M88 737 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 ACSM5Q6NUN0 579 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 CCDC103Q8IW40 242 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 IQCF1Q8N6M8 205 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 ZNF540Q8NDQ6 660 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 OR13C2Q8NGS9 318 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 STK35Q8TDR2 534 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 SAMD8Q96LT4 415 aa19.22■□□□□ 0.67
VPS28-212ENST00000530836 LHPPQ9H008 270 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms