RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	POMZP3	Q6PJE2	187 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TMPPE	Q6ZT21	453 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	FJX1	Q86VR8	437 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ELOA3	Q8NG57	546 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	PYURF	Q96I23	114 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	ZFP3	Q96NJ6	502 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TM9SF2	Q99805	663 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	PRR14	Q9BWN1	585 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	TRIM15	Q9C019	465 aa		18.63	■□□□□ 0.57
CD44-222	ENST00000526025	CPSF4L	A6NMK7	179 aa	Known RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	PRKD3	O94806	890 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	SEMG1	P04279	462 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	GLI4	P10075	376 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	IFNA8	P32881	189 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	EIF1AX	P47813	144 aa	Known RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	CDH12	P55289	794 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	RIPPLY2	Q5TAB7	128 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	RPTN	Q6XPR3	784 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	LINC00114	Q6XXX2	140 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	C3P1	Q6ZMU1	363 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	DEF8	Q6ZN54	512 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	ASRGL1	Q7L266	308 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	MARVELD2	Q8N4S9	558 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	OR10Q1	Q8NGQ4	319 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	OSTF1	Q92882	214 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	CCDC124	Q96CT7	223 aa	Known RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	PRRC1	Q96M27	445 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	OR5B2	Q96R09	309 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	TRIB1	Q96RU8	372 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	TMEM43	Q9BTV4	400 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	AMBRA1	Q9C0C7	1298 aa		18.62	■□□□□ 0.57
CD44-222	ENST00000526025	ERRFI1	Q9UJM3	462 aa	Predicted RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	MCTS1	Q9ULC4	181 aa	Known RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	INTS1	Q8N201	2190 aa	Known RBP	18.62	■□□□□ 0.57
CD44-222	ENST00000526025	GCN1	Q92616	2671 aa	Known RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	DOPEY1	Q5JWR5	2465 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	SLC22A20	A6NK97	555 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	CXCL13	O43927	109 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	FZD7	O75084	574 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	SEMA7A	O75326	666 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	LYPD3	O95274	346 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	OPN1LW	P04000	364 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	TFPI	P10646	304 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	HOXB6	P17509	224 aa	Known RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	CEACAM8	P31997	349 aa	Predicted RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	MYBPH	Q13203	477 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	SGCB	Q16585	318 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	SEM1	Q6ZVN7	128 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	YTHDF3	Q7Z739	585 aa	Known RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	TSPYL5	Q86VY4	417 aa	Predicted RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	FAM26E	Q8N5C1	309 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	ATP6V1C2	Q8NEY4	427 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	CCDC120	Q96HB5	630 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	ZNF845	Q96IR2	970 aa	Predicted RBP	18.61	■□□□□ 0.57
CD44-222	ENST00000526025	ARL5B	Q96KC2	179 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	C7orf34	Q96L11	122 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	ZNF426	Q9BUY5	554 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	OR11A1	Q9GZK7	315 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	MAGIX	Q9H6Y5	334 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	ENPP4	Q9Y6X5	453 aa		18.61	■□□□□ 0.57
CD44-222	ENST00000526025	LRRK2	Q5S007	2527 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	TCRBV5S2	A0A599	114 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	AQP12B	A6NM10	295 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	SULT2B1	O00204	365 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	SYNGR4	O95473	234 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	ITGA2	P17301	1181 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	AGA	P20933	346 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	DIO1	P49895	249 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	NUP107	P57740	925 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	TAS2R41	P59536	307 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	PON3	Q15166	354 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	ZNF239	Q16600	458 aa	Known RBP	18.6	■□□□□ 0.57
CD44-222	ENST00000526025	OR2A2	Q6IF42	318 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	CYP2R1	Q6VVX0	501 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	CYP4Z1	Q86W10	505 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	AQP12A	Q8IXF9	295 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	OFCC1	Q8IZS5	231 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	RPRML	Q8N4K4	120 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	FAM86B1	Q8N7N1	296 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	OR6S1	Q8NH40	331 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	RND1	Q92730	232 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	SLC41A3	Q96GZ6	507 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	SLC19A3	Q9BZV2	496 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	A4GNT	Q9UNA3	340 aa		18.6	■□□□□ 0.57
CD44-222	ENST00000526025	SPTBN1	Q01082	2364 aa	Known RBP	18.59	■□□□□ 0.57
CD44-222	ENST00000526025	IGKV1D-42	A0A075B6H8	117 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025		A0A1W2PNR3	127 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	ZC3H12D	A2A288	527 aa	Known RBP	18.59	■□□□□ 0.57
CD44-222	ENST00000526025	WIPF3	A6NGB9	483 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	HSPB2	A8KAH6	182 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	RCBTB2	O95199	551 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	THY1	P04216	161 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	CRH	P06850	196 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	CCNA2	P20248	432 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	IDUA	P35475	653 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	RBM34	P42696	430 aa	Known RBP	18.59	■□□□□ 0.57
CD44-222	ENST00000526025	AGFG1	P52594	562 aa	Known RBP	18.59	■□□□□ 0.57
CD44-222	ENST00000526025	SMS	P52788	366 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	SLC35A1	P78382	337 aa		18.59	■□□□□ 0.57
CD44-222	ENST00000526025	ADORA2A-AS1	P86434	159 aa		18.59	■□□□□ 0.57

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