RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PARPBPQ9NWS1 579 aa10.08□□□□□ -0.8
SDCBP-211ENST00000523441 DCTN4Q9UJW0 460 aa10.08□□□□□ -0.8
SDCBP-211ENST00000523441 MKLN1Q9UL63 735 aa10.08□□□□□ -0.8
SDCBP-211ENST00000523441 SPIN1Q9Y657 262 aaPredicted RBP10.08□□□□□ -0.8
SDCBP-211ENST00000523441 OR6C65A6NJZ3 312 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 PDLIM1O00151 329 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 CFLARO15519 480 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 BCAS1O75363 584 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 MSMBP08118 114 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 IFI6P09912 130 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 CECR9P0C854 216 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 ZFP36P26651 326 aaKnown RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 GPR6P46095 362 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 PRKAA2P54646 552 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 NPRL3Q12980 569 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 TBRG1Q3YBR2 411 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 KRT80Q6KB66 452 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 ANKRD16Q6P6B7 361 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 GPAT4Q86UL3 456 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 MYPOPQ86VE0 399 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 SLC22A9Q8IVM8 553 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 C1orf162Q8NEQ5 155 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 OR7A2PQ8NGA2 310 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 FAM76AQ8TAV0 307 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 SLC25A43Q8WUT9 341 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 CKAP2Q8WWK9 683 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 MRPL24Q96A35 216 aaKnown RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 ALKBH3Q96Q83 286 aaPredicted RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 JMJD8Q96S16 334 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 LAT2Q9GZY6 243 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 SAP130Q9H0E3 1048 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 CDC42EP4Q9H3Q1 356 aaKnown RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 ACER3Q9NUN7 267 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 C1orf109Q9NX04 203 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 CHRNA9Q9UGM1 479 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 KCNE5Q9UJ90 142 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 SLC9A8Q9Y2E8 581 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 WBP11Q9Y2W2 641 aaKnown RBP10.07□□□□□ -0.8
SDCBP-211ENST00000523441 FLVCR1Q9Y5Y0 555 aa10.07□□□□□ -0.8
SDCBP-211ENST00000523441 A0A0G2JK05 382 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 SERTM1A2A2V5 107 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 FCMRO60667 390 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 PMS2P2O95744 297 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 C6orf47O95873 294 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 AVPP01185 164 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 SNRPAP09012 282 aaKnown RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 LINC00032P0C843 101 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 SAGP10523 405 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 COL8A2P25067 703 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 CAPZA2P47755 286 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 RIN1Q13671 783 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 EFNB3Q15768 340 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 ATP6AP1LQ52LC2 224 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 ZNF311Q5JNZ3 666 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 CFAP157Q5JU67 520 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 EXOSC6Q5RKV6 272 aaKnown RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 LIPMQ5VYY2 423 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 SHISA2Q6UWI4 295 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 TRIM46Q7Z4K8 759 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 BPIFB2Q8N4F0 458 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 OR1K1Q8NGR3 316 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 OR2T11Q8NH01 316 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 TAF15Q92804 592 aaKnown RBP eCLIP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 L3HYPDHQ96EM0 354 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 ZNF385AQ96PM9 386 aaKnown RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 DOK1Q99704 481 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 NAA11Q9BSU3 229 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 KATNB1Q9BVA0 655 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 KCNF1Q9H3M0 494 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 ESM1Q9NQ30 184 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 ACSS1Q9NUB1 689 aaPredicted RBP10.06□□□□□ -0.8
SDCBP-211ENST00000523441 TMEM45AQ9NWC5 275 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 TMEM181Q9P2C4 612 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 GIMAP2Q9UG22 337 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 SPEF1Q9Y4P9 236 aa10.06□□□□□ -0.8
SDCBP-211ENST00000523441 VSTM5A8MXK1 200 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 NPIPB9F8W1W9 429 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 PPIHO43447 177 aaKnown RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 SCN2BO60939 215 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 AKR7A3O95154 331 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 BCL10O95999 233 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 PNPP00491 289 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 ARAFP10398 606 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 LAMP1P11279 417 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 HPCAL1P37235 193 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 APOBEC1P41238 236 aaKnown RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 FRKP42685 505 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 IDH2P48735 452 aaKnown RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 SLC16A1P53985 500 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 HGFACQ04756 655 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 SNTB2Q13425 540 aaKnown RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 KIAA0040Q15053 153 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 ALKBH6Q3KRA9 238 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 RFTN2Q52LD8 501 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 OTUD3Q5T2D3 398 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 UGT2A3Q6UWM9 527 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 C1orf229Q6ZS94 237 aaPredicted RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 EIF3MQ7L2H7 374 aaKnown RBP10.05□□□□□ -0.8
SDCBP-211ENST00000523441 C16orf62Q7Z3J2 963 aa10.05□□□□□ -0.8
SDCBP-211ENST00000523441 TMEM99Q8N816 258 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms