RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 MKRN2OSH3BPM6 223 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM178BH3BS89 294 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TEX46H3BTG2 121 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN34H7C241 214 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 BMPR1BO00238 502 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SIRPB1O00241 398 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC1A7O00341 560 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCTN6O00399 190 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAFD1O14545 582 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFXANKO14593 260 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIMM23O14925 209 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CASKO14936 926 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZBTB5O15062 677 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCAMP2O15127 329 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TM9SF1O15321 606 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 INPP4BO15327 924 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MID1O15344 667 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF3HO15372 352 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HDAC3O15379 428 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TOX3O15405 576 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZW10O43264 779 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AQP9O43315 295 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EMC8O43402 210 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 COCHO43405 550 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPIHO43447 177 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 XRCC2O43543 280 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DENRO43583 198 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSTPIP1O43586 416 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAPPC3O43617 180 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GATCO43716 136 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYTH3O43739 400 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SYNGR3O43761 229 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHST1O43916 411 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AIREO43918 545 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SOX15O60248 233 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GMDSO60547 372 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF4E2O60573 245 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SRPX2O60687 465 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PFKFB2O60825 505 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAMP1O60894 148 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAMP3O60896 148 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ENTPD5O75356 428 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NDUFS6O75380 124 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 KHDRBS3O75525 346 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCN3O75636 299 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDC123O75794 336 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANXA9O76027 345 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERLIN2O94905 339 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NSA2O95478 260 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN14O95500 239 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPP1R3DO95685 299 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 LDOC1O95751 146 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AP2A1O95782 977 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM50AO95807 157 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGSF6O95976 241 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASS1P00966 412 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV1-44P01699 117 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHG4P01861 327 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HLA-DRAP01903 254 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMP1P03956 469 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 P04436 131 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFNW1P05000 195 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ATP1B1P05026 303 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EDN1P05305 212 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPIP06744 558 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UMODP07911 640 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RHOCP08134 193 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SERPINA6P08185 405 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANXA5P08758 320 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 KRT16P08779 473 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 STSP08842 583 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RPSAP08865 295 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNRPCP09234 159 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 HOXB7P09629 217 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OCM2P0CE71 109 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35E2BP0CK96 405 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC35E2P0CK97 266 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRSS56P0CW18 603 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ADORA3P0DMS8 318 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMIM10L1P0DMW3 83 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV4-30-4P0DP06 118 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV4-31P0DP07 118 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACP2P11117 423 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC2A2P11168 524 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHRNB1P11230 501 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANXA3P12429 323 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MLNP12872 115 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 NR2C1P13056 603 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GFAPP14136 432 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MYOD1P15172 320 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GATA1P15976 413 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABOP16442 354 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 DPEP1P16444 411 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF43P17038 809 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 XRCC1P18887 633 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 POLR2EP19388 210 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PMCHP20382 165 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EFNA1P20827 205 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CNR1P21554 472 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCKDHBP21953 392 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms