RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CCSAPQ6IQ19 270 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 ALKAL2Q6UX46 152 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 TOX2Q96NM4 488 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 DCLRE1CQ96SD1 692 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 NMNAT3Q96T66 252 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 HDAC8Q9BY41 377 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 GSKIPQ9P0R6 139 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 MYEF2Q9P2K5 600 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 V9GYH0 126 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A0A6YYC8 382 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 EEF1E1-BLOC1S5C9J1V9 151 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PRRT4C9JH25 899 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 H0YGG7 62 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 I3L1I5 382 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SCO2O43819 266 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 OLFM2O95897 454 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 HRGP04196 525 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 ATP1B1P05026 303 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 ARF3P61204 181 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 FGF13Q92913 245 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 CNRIP1Q96F85 164 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 RBP7Q96R05 134 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PDCD1LG2Q9BQ51 273 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM168Q9H0V1 697 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SYT4Q9H2B2 425 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 MBNL1Q9NR56 388 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 EPHA6Q9UF33 1036 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 FFAR1O14842 300 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 RGS13O14921 159 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 TLX3O43711 291 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PRH1P02810 166 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SYPP08247 313 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 HCKP08631 526 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 H2BFMP0C1H6 154 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PNMTP11086 282 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 NFYAP23511 347 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 TSFMP43897 325 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 CCR9P51686 369 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 NKPD1Q17RQ9 610 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM78AQ5JUQ0 283 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 BTN2A1Q7KYR7 527 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SYT9Q86SS6 491 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM150AQ86TG1 271 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 GLB1L2Q8IW92 636 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 OR13C3Q8NGS6 347 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 HAVCR2Q8TDQ0 301 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 LINC00615Q96LM1 132 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 BARHL1Q9BZE3 327 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 SLAMF7Q9NQ25 335 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 PLEKHB1Q9UF11 243 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 ENTPD2Q9Y5L3 495 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 KCNE3Q9Y6H6 103 aa7.8□□□□□ -1.16
LIMCH1-216ENST00000512820 DCDC2BA2VCK2 349 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 KDM4EB2RXH2 506 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 LIMS3P0CW19 117 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 LIMS4P0CW20 117 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 BDH1Q02338 343 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 TRMT12Q53H54 448 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM27D1Q5T7N8 215 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 RTL10Q7L3V2 364 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 KCTD20Q7Z5Y7 419 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ARL14Q8N4G2 192 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 PNLDC1Q8NA58 520 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 OR7G2Q8NG99 324 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 STOML3Q8TAV4 291 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 WDR34Q96EX3 536 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SDF2Q99470 211 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SEC22CQ9BRL7 303 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 CMC2Q9NRP2 79 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 REV1Q9UBZ9 1251 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 MKL2Q9ULH7 1088 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 CXorf51AA0A1B0GTR3 108 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM72A0PK05 275 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF878C9JN71 531 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 PEX12O00623 359 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 GABRB1P18505 474 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 RASGEF1BQ0VAM2 473 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 INSL4Q14641 139 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SMAP2Q8WU79 429 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 DHRS1Q96LJ7 313 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 INTS14Q96SY0 518 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 VN1R3Q9BXE9 311 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 BCL2L14Q9BZR8 327 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 NXF2Q9GZY0 626 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 KCNN3Q9UGI6 736 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ERVK-19Q9WJR5 959 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 RAF1P04049 648 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 AKR1C4P17516 323 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 SRMP19623 302 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 PGCP20142 388 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 HTR2AP28223 471 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 METAP1P53582 386 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 HCCSP53701 268 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 PLCXD2Q0VAA5 305 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 HTR4Q13639 388 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 FAM76BQ5HYJ3 339 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 EOGTQ5NDL2 527 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ARHGAP40Q5TG30 622 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 ESPNLQ6ZVH7 1005 aa7.79□□□□□ -1.16
LIMCH1-216ENST00000512820 RFPL4BQ6ZWI9 263 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms