RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PLD2O14939 933 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 YKT6O15498 198 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PLPP2O43688 288 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 EIF4E2O60573 245 aaKnown RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 TSPAN2O60636 221 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SDC3O75056 442 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 CDC123O75794 336 aaPredicted RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 OR7A10O76100 309 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PTTG1O95997 202 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 LALBAP00709 142 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SBK2P0C263 348 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SAGP10523 405 aaPredicted RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 FOLR1P15328 257 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 FBLP22087 321 aaKnown RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 PAICSP22234 425 aaKnown RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 EPHA8P29322 1005 aaPredicted RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 TNFSF8P32971 234 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 ARL4DP49703 201 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PNLIPRP2P54317 469 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 DLX5P56178 289 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PRPS1P60891 318 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 RUNX1T1Q06455 604 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 AGAP7PQ5VUJ5 663 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PMS2CLQ68D20 193 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 VASNQ6EMK4 673 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 RHBDD2Q6NTF9 364 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 LHFPL3Q86UP9 236 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SIRT6Q8N6T7 355 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 TEX19Q8NA77 164 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 POMGNT2Q8NAT1 580 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 OR1N1Q8NGS0 311 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SETD6Q8TBK2 473 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 TP53INP1Q96A56 240 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 ITPKCQ96DU7 683 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SLC30A2Q9BRI3 323 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 MFRPQ9BY79 579 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 SEMA4CQ9C0C4 833 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 C6orf62Q9GZU0 229 aaPredicted RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 NXF5Q9H1B4 397 aaKnown RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 ADGRL4Q9HBW9 690 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 NRIP3Q9NQ35 241 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PLEKHB1Q9UF11 243 aaPredicted RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 SUSD2Q9UGT4 822 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 DAPK2Q9UIK4 370 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 ZNF337Q9Y3M9 751 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 CLCA3PQ9Y6N3 262 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 TNRC6BQ9UPQ9 1833 aaKnown RBP9.83□□□□□ -0.84
USP4-214ENST00000491791 SCN2AQ99250 2005 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 IGKV1D-42A0A075B6H8 117 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 A0A1B0GTQ1 180 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 LNP1A1A4G5 178 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 C12orf71A8MTZ7 269 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 ALG1L2C9J202 215 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SCDO00767 359 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 MAGEB3O15480 346 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 ZNF264O43296 627 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 UTS2O95399 124 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 TXNDC12O95881 172 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 UBL4AP11441 157 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 CEACAM1P13688 526 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 FUT1P19526 365 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 OR1D4P47884 311 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 DHPSP49366 369 aaPredicted RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 DIO1P49895 249 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 PGDP52209 483 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SLC25A1P53007 311 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 RPS25P62851 125 aaKnown RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 FABP5Q01469 135 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 ACY1Q03154 408 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 CRYZQ08257 329 aaKnown RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 FOXC1Q12948 553 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 KCNAB1Q14722 419 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 EBPQ15125 230 aaKnown RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 METAP1DQ6UB28 335 aaPredicted RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 UNQ6494/PRO21346Q6UXR6 183 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 CACTIN-AS1Q8N1I8 211 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SYS1Q8N2H4 156 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 LRRC75AQ8NAA5 344 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 GRHL3Q8TE85 626 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SAP25Q8TEE9 199 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 CHAC2Q8WUX2 184 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SPRYD4Q8WW59 207 aaPredicted RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 AP3S1Q92572 193 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 C1GALT1C1Q96EU7 318 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 SDHCQ99643 169 aaPredicted RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 SOSTQ9BQB4 213 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 KATNB1Q9BVA0 655 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 NUDT9Q9BW91 350 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 HCAR1Q9BXC0 346 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 EXOSC4Q9NPD3 245 aaKnown RBP9.82□□□□□ -0.84
USP4-214ENST00000491791 IRAK4Q9NWZ3 460 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 PILRBQ9UKJ0 227 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 HIF3AQ9Y2N7 669 aa9.82□□□□□ -0.84
USP4-214ENST00000491791 TRAV27A0A087WT01 109 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ARPC4-TTLL3A0A0A6YYG9 625 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 LY6G6EA0A0G2JKS1 128 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 TMEM8BA6NDV4 472 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR2W5A6NFC9 320 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ANKRD61A6NGH8 418 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CTDSP2O14595 271 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms