RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 RTL6Q6ICC9 239 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 OFCC1Q8IZS5 231 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 ELOA3Q8NG57 546 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 TMEM255BQ8WV15 326 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 OR5B2Q96R09 309 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 SRXN1Q9BYN0 137 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 MAGIXQ9H6Y5 334 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 C12orf10Q9HB07 376 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 IL1RAPQ9NPH3 570 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 SERINC1Q9NRX5 453 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 ALKBH4Q9NXW9 302 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 PRDM4Q9UKN5 801 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 AURKCQ9UQB9 309 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 FAM215AQ9Y5M1 114 aa13.28□□□□□ -0.28
COL9A3-209ENST00000469852 ADAMDEC1O15204 470 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF208O43345 1280 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 CXCL13O43927 109 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 PNMTP11086 282 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 EIF1AXP47813 144 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 UGT2B15P54855 530 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 CHRNB3Q05901 458 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 RBPJQ06330 500 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 MYBPHQ13203 477 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 FAM98BQ52LJ0 330 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 SWT1Q5T5J6 900 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ESPNLQ6ZVH7 1005 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 PIWIL3Q7Z3Z3 882 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ADGRE4PQ86SQ3 457 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 MEIOBQ8N635 442 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 PIK3C3Q8NEB9 887 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 OR10D3Q8NH80 312 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 OR2V1Q8NHB1 315 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 KTI12Q96EK9 354 aaPredicted RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF426Q9BUY5 554 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 PTDSS2Q9BVG9 487 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 POLR2J2Q9GZM3 115 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 POLR2J3Q9H1A7 115 aaKnown RBP13.27□□□□□ -0.29
COL9A3-209ENST00000469852 TESMINQ9Y4I5 508 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ARHGAP21Q5T5U3 1957 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 ESPL1Q14674 2120 aa13.27□□□□□ -0.29
COL9A3-209ENST00000469852 TRGV8A0A0C4DH27 118 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 CLCA1A8K7I4 914 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 A8MVM7 634 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PRRG2O14669 202 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PIP5K1CO60331 668 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 GPIP06744 558 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 RAP2AP10114 183 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 RHCEP18577 417 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 SLC7A1P30825 629 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PTPN13Q12923 2485 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 ACSF3Q4G176 576 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 C1orf140Q5VVS0 124 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 HBMQ6B0K9 141 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 RPTNQ6XPR3 784 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 SEM1Q6ZVN7 128 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PM20D2Q8IYS1 436 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 MARVELD2Q8N4S9 558 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PFN4Q8NHR9 129 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 SLC25A43Q8WUT9 341 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 OSTF1Q92882 214 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 TAAR8Q969N4 342 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 DDIT4LQ96D03 193 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 RSRC1Q96IZ7 334 aaKnown RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 DHRS1Q96LJ7 313 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 PIP5K1AQ99755 562 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 FNDC11Q9BVV2 318 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 CHID1Q9BWS9 393 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 DENND2DQ9H6A0 471 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 NMNAT1Q9HAN9 279 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 MEPEQ9NQ76 525 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 VNN3Q9NY84 501 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 SELENONQ9NZV5 590 aa13.26□□□□□ -0.29
COL9A3-209ENST00000469852 SPIN1Q9Y657 262 aaPredicted RBP13.26□□□□□ -0.29
COL9A3-209ENST00000469852 IGHV3-15A0A0B4J1V0 119 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 GJE1A6NN92 205 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 ZNF814B7Z6K7 855 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 LRRN3E7EW58 273 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 KPNA4O00629 521 aaPredicted RBP13.25□□□□□ -0.29
COL9A3-209ENST00000469852 FKBP6O75344 327 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 TGM6O95932 706 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 STSP08842 583 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 THRBP10828 461 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 UMPSP11172 480 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 ACVR2AP27037 513 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 RRM2P31350 389 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 CA7P43166 264 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 RPS5P46782 204 aaKnown RBP13.25□□□□□ -0.29
COL9A3-209ENST00000469852 DIO1P49895 249 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 ACTR3P61158 418 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 SPIBQ01892 262 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 LTBQ06643 244 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 SRSF1Q07955 248 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL9A3-209ENST00000469852 ST3GAL3Q11203 375 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 PPP1R8Q12972 351 aaKnown RBP13.25□□□□□ -0.29
COL9A3-209ENST00000469852 C1orf185Q5T7R7 199 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 TBPL2Q6SJ96 375 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 TMPPEQ6ZT21 453 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 CYP4Z1Q86W10 505 aa13.25□□□□□ -0.29
COL9A3-209ENST00000469852 ATCAYQ86WG3 371 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms