RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TRAPPC4Q9Y296 219 aa19.84■□□□□ 0.77
USP4-208ENST00000464168 YLPM1P49750 1951 aaKnown RBP19.84■□□□□ 0.77
USP4-208ENST00000464168 CLDN24A6NM45 220 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 CCNA2P20248 432 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 MAGEA8P43361 318 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 PHC1P78364 1004 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 KCNJ10P78508 379 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 SMU1Q2TAY7 513 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 C9orf135Q5VTT2 229 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 TNFAIP8L2Q6P589 184 aaPredicted RBP19.83■□□□□ 0.77
USP4-208ENST00000464168 ANKRD46Q86W74 232 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 LSRQ86X29 649 aaPredicted RBP19.83■□□□□ 0.77
USP4-208ENST00000464168 BEX2Q9BXY8 128 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 EXOSC3Q9NQT5 275 aaKnown RBP19.83■□□□□ 0.77
USP4-208ENST00000464168 TMEM181Q9P2C4 612 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 PCDHGB4Q9UN71 923 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 ATP23Q9Y6H3 246 aa19.83■□□□□ 0.77
USP4-208ENST00000464168 PRAMEF27A3QJZ7 478 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 BPGMP07738 259 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 UQCRC2P22695 453 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 IDH2P48735 452 aaKnown RBP19.82■□□□□ 0.76
USP4-208ENST00000464168 EFNA4P52798 201 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 SLC25A3Q00325 362 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 CYB5R2Q6BCY4 276 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 CASP12Q6UXS9 341 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 RIBC1Q8N443 379 aaPredicted RBP19.82■□□□□ 0.76
USP4-208ENST00000464168 ARFGAP2Q8N6H7 521 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 PROX1Q92786 737 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 SLC17A5Q9NRA2 495 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 SLC7A10Q9NS82 523 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 LGALS13Q9UHV8 139 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 DCTN4Q9UJW0 460 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 FLVCR1Q9Y5Y0 555 aa19.82■□□□□ 0.76
USP4-208ENST00000464168 HEATR1Q9H583 2144 aaKnown RBP19.82■□□□□ 0.76
USP4-208ENST00000464168 PRSS51A0A1B0GVH4 220 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 CPSF4O95639 269 aaKnown RBP19.81■□□□□ 0.76
USP4-208ENST00000464168 IGHV4-31P0DP07 118 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 CREB1P16220 341 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 SAXO2Q658L1 398 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 CNOT9Q92600 299 aaKnown RBP19.81■□□□□ 0.76
USP4-208ENST00000464168 AKTIPQ9H8T0 292 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 FKRPQ9H9S5 495 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.81■□□□□ 0.76
USP4-208ENST00000464168 PARPBPQ9NWS1 579 aa19.81■□□□□ 0.76
USP4-208ENST00000464168 TMED7-TICAM2A0A0A6YYA0 188 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 AP3D1O14617 1153 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 LY6HO94772 140 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 F12P00748 615 aaPredicted RBP19.8■□□□□ 0.76
USP4-208ENST00000464168 C1QCP02747 245 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 NUDT17P0C025 328 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 IMPDH2P12268 514 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 USF1P22415 310 aaPredicted RBP19.8■□□□□ 0.76
USP4-208ENST00000464168 APOBEC3AP31941 199 aaPredicted RBP19.8■□□□□ 0.76
USP4-208ENST00000464168 SLC35A1P78382 337 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 CHRNB3Q05901 458 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 SLC17A1Q14916 467 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 TSPO2Q5TGU0 170 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 C17orf78Q8N4C9 275 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 C1orf162Q8NEQ5 155 aaPredicted RBP19.8■□□□□ 0.76
USP4-208ENST00000464168 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.8■□□□□ 0.76
USP4-208ENST00000464168 NEURL3Q96EH8 262 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 PPP1R36Q96LQ0 422 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 ZIM3Q96PE6 472 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 DPY30Q9C005 99 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 UPB1Q9UBR1 384 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 LPAR3Q9UBY5 353 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 OSGIN1Q9UJX0 560 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 SLC9A8Q9Y2E8 581 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 AMDHD2Q9Y303 409 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 TMED7Q9Y3B3 224 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 PMF1-BGLAPU3KQ54 211 aa19.8■□□□□ 0.76
USP4-208ENST00000464168 ITM2AO43736 263 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 EIF1BO60739 113 aaKnown RBP19.79■□□□□ 0.76
USP4-208ENST00000464168 CSF3P09919 207 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 BMP4P12644 408 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 ETV4P43268 484 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 HTR3AP46098 478 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 PDCD2Q16342 344 aaPredicted RBP19.79■□□□□ 0.76
USP4-208ENST00000464168 MST1LQ2TV78 715 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 KRTAP24-1Q3LI83 254 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 ANXA8L1Q5VT79 327 aa19.79■□□□□ 0.76
USP4-208ENST00000464168 MALRD1Q5VYJ5 2156 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 ANK2Q01484 3957 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 TMEM72A0PK05 275 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 ZNF208O43345 1280 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 ZNF16P17020 682 aaPredicted RBP19.78■□□□□ 0.76
USP4-208ENST00000464168 KHKP50053 298 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 POLR2HP52434 150 aaKnown RBP19.78■□□□□ 0.76
USP4-208ENST00000464168 LSM11P83369 360 aaKnown RBP eCLIP19.78■□□□□ 0.76
USP4-208ENST00000464168 TGFBR3Q03167 851 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 CASP8Q14790 479 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 GPAT3Q53EU6 434 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 ARIH2OSQ8N7S6 290 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 VPS37AQ8NEZ2 397 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 PMM1Q92871 262 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 TESCQ96BS2 214 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 DDIT4LQ96D03 193 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 NAA11Q9BSU3 229 aaPredicted RBP19.78■□□□□ 0.76
USP4-208ENST00000464168 SHARPINQ9H0F6 387 aa19.78■□□□□ 0.76
USP4-208ENST00000464168 MARCOQ9UEW3 520 aaPredicted RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms