RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TMEM181Q9P2C4 612 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 USH1CQ9Y6N9 552 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 DSPPQ9NZW4 1301 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 TMEM72A0PK05 275 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZNF716A6NP11 495 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 POLR3GO15318 223 aaPredicted RBP12.34□□□□□ -0.43
USP4-206ENST00000461553 ZNF208O43345 1280 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZCCHC18P0CG32 403 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ETFAP13804 333 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 GGT1P19440 569 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 IGHV1-2P23083 117 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 EDNRAP25101 427 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 TACR3P29371 465 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 SLC1A3P43003 542 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 MAP2K6P52564 334 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 RPS4XP62701 263 aaKnown RBP12.34□□□□□ -0.43
USP4-206ENST00000461553 SLC35A1P78382 337 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 LARS2Q15031 903 aaKnown RBP12.34□□□□□ -0.43
USP4-206ENST00000461553 GTDC1Q4AE62 458 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZNF836Q6ZNA1 936 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ADGRG3Q86Y34 549 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 OR52P1PQ8NH57 321 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 LRRC8CQ8TDW0 803 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZNF75CPQ92670 426 aaPredicted RBP12.34□□□□□ -0.43
USP4-206ENST00000461553 MUCL1Q96DR8 90 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 COX4I2Q96KJ9 171 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 C7orf26Q96N11 449 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 BDH2Q9BUT1 245 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 RAD21L1Q9H4I0 556 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 SLC6A13Q9NSD5 602 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 OSGIN1Q9UJX0 560 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZNF443Q9Y2A4 671 aaPredicted RBP12.34□□□□□ -0.43
USP4-206ENST00000461553 SLC9A8Q9Y2E8 581 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 ZANQ9Y493 2812 aa12.34□□□□□ -0.43
USP4-206ENST00000461553 FAM234BA2RU67 622 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CDHR4A6H8M9 788 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 H7C1Q1 480 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 EIF1BO60739 113 aaKnown RBP12.33□□□□□ -0.44
USP4-206ENST00000461553 MRPL33O75394 65 aaKnown RBP12.33□□□□□ -0.44
USP4-206ENST00000461553 RAD51DO75771 328 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 IGHV3-9P01782 118 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 MVDP53602 400 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 SLC16A1P53985 500 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 COPZ1P61923 177 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 BSPH1Q075Z2 132 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 KRTAP21-3Q3LHN1 58 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 RPS26P11Q5JNZ5 115 aaPredicted RBP12.33□□□□□ -0.44
USP4-206ENST00000461553 TIMM23BQ5SRD1 257 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 RNF220Q5VTB9 566 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 FBXW9Q5XUX1 488 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 ADAM5Q6NVV9 412 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CLEC9AQ6UXN8 241 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CASP12Q6UXS9 341 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 VRK2Q86Y07 508 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CADM2Q8N3J6 435 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 KBTBD8Q8NFY9 601 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 IGFBPL1Q8WX77 278 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 VPS33AQ96AX1 596 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 AURKBQ96GD4 344 aaPredicted RBP12.33□□□□□ -0.44
USP4-206ENST00000461553 TMEM19Q96HH6 336 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 SMR3AQ99954 134 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 NAA11Q9BSU3 229 aaPredicted RBP12.33□□□□□ -0.44
USP4-206ENST00000461553 ARMC7Q9H6L4 198 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 TCF7L2Q9NQB0 619 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 LAMP3Q9UQV4 416 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 TRAPPC4Q9Y296 219 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CSPG4Q6UVK1 2322 aa12.33□□□□□ -0.44
USP4-206ENST00000461553 CIB4A0PJX0 185 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 HEXAP06865 529 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 THBS1P07996 1170 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 GKN3PP0CG01 181 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 PAX1P15863 534 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 CXCR1P25024 350 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 IDUAP35475 653 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ATP5J2P56134 94 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 FADDQ13158 208 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 MAPK11Q15759 364 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ZSWIM7Q19AV6 140 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ZNF672Q499Z4 452 aaPredicted RBP12.32□□□□□ -0.44
USP4-206ENST00000461553 EPGNQ6UW88 154 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 SEZ6L2Q6UXD5 910 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ATG4DQ86TL0 474 aaPredicted RBP12.32□□□□□ -0.44
USP4-206ENST00000461553 P2RY8Q86VZ1 359 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 CCDC103Q8IW40 242 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ZNF433Q8N7K0 673 aaPredicted RBP12.32□□□□□ -0.44
USP4-206ENST00000461553 GOLGA6L1Q8N7Z2 621 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 SLC38A5Q8WUX1 472 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 DYDC1Q8WWB3 177 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 RLIMQ9NVW2 624 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 ASB6Q9NWX5 421 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 TAS2R16Q9NYV7 291 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 MALT1Q9UDY8 824 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 HIVEP2P31629 2446 aa12.32□□□□□ -0.44
USP4-206ENST00000461553 A0A0G2JPF8 293 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 A0A1W2PP18 115 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 ZC3H12DA2A288 527 aaKnown RBP12.31□□□□□ -0.44
USP4-206ENST00000461553 TRIM64A6NGJ6 449 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 TRIM64BA6NI03 449 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 OR5H1A6NKK0 313 aa12.31□□□□□ -0.44
USP4-206ENST00000461553 CCT8L1PA6NM43 557 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms