RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 FRKP42685 505 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 RFX3P48380 749 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 SUCLG1P53597 346 aaKnown RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 SLC18A2Q05940 514 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 LTBQ06643 244 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 FAM27E3Q08E93 113 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 HSPB3Q12988 150 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 STX5Q13190 355 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 PDE7AQ13946 482 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 PON3Q15166 354 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 TMEM44Q2T9K0 475 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 CLEC6AQ6EIG7 209 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 ZCCHC12Q6PEW1 402 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 ZNF474Q6S9Z5 364 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 Q6ZSR9 355 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 ZNF551Q7Z340 670 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 AMIGO2Q86SJ2 522 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 CNEP1R1Q8N9A8 125 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 FNDC9Q8TBE3 224 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 GPR151Q8TDV0 419 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 UBLCP1Q8WVY7 318 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.49□□□□□ -1.37
USP54-208ENST00000461520 FIG4Q92562 907 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 PIK3R3Q92569 461 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 PPCDCQ96CD2 204 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 MTERF3Q96E29 417 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 ZBED6CLQ96FA7 236 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 ZNF845Q96IR2 970 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 WFIKKN1Q96NZ8 548 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 FAM111AQ96PZ2 611 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 CCT7Q99832 543 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 SMR3AQ99954 134 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 SLC39A3Q9BRY0 314 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 REEP4Q9H6H4 257 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 ACSS1Q9NUB1 689 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 PAQR5Q9NXK6 330 aaPredicted RBP6.49□□□□□ -1.37
USP54-208ENST00000461520 FLRT3Q9NZU0 649 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 DOCK7Q96N67 2140 aa6.49□□□□□ -1.37
USP54-208ENST00000461520 JMJD1CQ15652 2540 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 GXYLT2A0PJZ3 443 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 H0YC42 278 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 C16orf97H3BN30 126 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 LSM1O15116 133 aaKnown RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 OXSR1O95747 527 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 HSPA4LO95757 839 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 IGKV1D-16P01601 117 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 FGF4P08620 206 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 SDC1P18827 310 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 TBXA2RP21731 343 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 CRYGSP22914 178 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 UGT2B10P36537 528 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 ASMTP46597 345 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 KCNJ5P48544 419 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 PRKAG1P54619 331 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 TPD52P55327 224 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 CLDN20P56880 219 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 RPL38P63173 70 aaKnown RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 SIRPAP78324 504 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 HABP2Q14520 560 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 PCLAFQ15004 111 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MLC1Q15049 377 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 GUSBP1Q15486 140 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 SGCBQ16585 318 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 GRAMD1BQ3KR37 738 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 RFTN2Q52LD8 501 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 SHEQ5VZ18 495 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 ANKRD26P1Q6NSI1 321 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 LRIG3Q6UXM1 1119 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 APOOLQ6UXV4 268 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 R3HCC1LQ7Z5L2 792 aaKnown RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 BIVMQ86UB2 503 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MISPQ8IVT2 679 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 C10orf107Q8IVU9 208 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 WDR75Q8IWA0 830 aaKnown RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 C4orf33Q8N1A6 199 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MIER2Q8N344 545 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 WFDC11Q8NEX6 87 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 OR5M1Q8NGP8 315 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 OR6Y1Q8NGX8 325 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 OR2T11Q8NH01 316 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 OR4C3Q8NH37 302 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 FAM110BQ8TC76 370 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 PIGTQ969N2 578 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 CIDECQ96AQ7 238 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 GIMAP5Q96F15 307 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MS4A4EQ96PG1 132 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 TSSK3Q96PN8 268 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 PIP5K1AQ99755 562 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 MED18Q9BUE0 208 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 GATA5Q9BWX5 397 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 OPN3Q9H1Y3 402 aaPredicted RBP6.48□□□□□ -1.37
USP54-208ENST00000461520 TUBB1Q9H4B7 451 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 EQTNQ9NQ60 294 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 UBQLN4Q9NRR5 601 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 KLHL28Q9NXS3 571 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 ETAA1Q9NY74 926 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 SH3BP4Q9P0V3 963 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 ADAM21Q9UKJ8 722 aa6.48□□□□□ -1.37
USP54-208ENST00000461520 PROCRQ9UNN8 238 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms