RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MRPS33Q9Y291 106 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 YBX2Q9Y2T7 364 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TSSC4Q9Y5U2 329 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 KPTNQ9Y664 436 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TRAV26-1A0A087WT03 109 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 I6L893 689 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TP53I11O14683 189 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 IMPA2O14732 288 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 KHDRBS3O75525 346 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 UPK3AO75631 287 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GADD45GO95257 159 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC16A8O95907 504 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GYPCP04921 128 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ALPIP09923 528 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PNMTP11086 282 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 FGF5P12034 268 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NPR2P20594 1047 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 BSGP35613 385 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RGS4P49798 205 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MEOX1P50221 254 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PDLIM4P50479 330 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NOVA1P51513 510 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 YBX1P67809 324 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ADARB1P78563 741 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TFF2Q03403 129 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TLE4Q04727 773 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RAB31Q13636 194 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RBMS2Q15434 407 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 HAGHQ16775 308 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MICAQ29983 383 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PIGGQ5H8A4 983 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM196Q5HYL7 178 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RHBDF2Q6PJF5 856 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C11orf57Q6ZUT1 292 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TSPAN33Q86UF1 283 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PIM3Q86V86 326 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ZBTB8OSQ8IWT0 167 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C1orf87Q8N0U7 546 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C2orf73Q8N5S3 287 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NLGN4YQ8NFZ3 816 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OR5T3Q8NGG3 340 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OR10K1Q8NGX5 313 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OR51A7Q8NH64 312 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ABHD5Q8WTS1 349 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RNF133Q8WVZ7 376 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 DEDD2Q8WXF8 326 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NRGNQ92686 78 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 OTULINQ96BN8 352 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C12orf43Q96C57 262 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TM4SF18Q96CE8 201 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ISOC1Q96CN7 298 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 AKR1E2Q96JD6 320 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ST6GAL2Q96JF0 529 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 HIST1H2AAQ96QV6 131 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PRMT1Q99873 361 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 FNDC11Q9BVV2 318 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SEMA6AQ9H2E6 1030 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 CPVLQ9H3G5 476 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 RDH8Q9NYR8 311 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SEC14L3Q9UDX4 400 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SNX12Q9UMY4 172 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 USP22Q9UPT9 525 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 DNAH12Q6ZR08 3092 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 CHD5Q8TDI0 1954 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SMCHD1A6NHR9 2005 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 COL11A1P12107 1806 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LOC100996750A0A140TA64 210 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 WIPF3A6NGB9 483 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C5orf52A6NGY3 159 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 AZIN1O14977 448 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LYPLA1O75608 230 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ATG12O94817 140 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 NDUFA10O95299 355 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 C2P06681 752 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TRAPPC2P0DI81 140 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TRAPPC2BP0DI82 140 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SMIM10L1P0DMW3 83 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ANXA3P12429 323 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LYL1P12980 280 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MYOGP15173 224 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 HLA-GP17693 338 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 LHCGRP22888 699 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ADORA2AP29274 412 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC6A6P31641 620 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 PBX1P40424 430 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 HTR5AP47898 357 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 EVX1P49640 407 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GZMKP49863 264 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MFAP4P55083 255 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 WNT3P56703 355 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 MAXP61244 160 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 CCL7P80098 99 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 SSBP2P81877 361 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 E2F1Q01094 437 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 GNA12Q03113 381 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 FPGSQ05932 587 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 ECH1Q13011 328 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 TNK1Q13470 666 aa4.41□□□□□ -1.7
CCDC88A-209ENST00000456975 DPYSL3Q14195 570 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms