RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 USB1Q9BQ65 265 aaKnown RBP18.82■□□□□ 0.6
HMGB3-205ENST00000455596 SPATA9Q9BWV2 254 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 ADAM19Q9H013 955 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 A4GALTQ9NPC4 353 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 SLC25A37Q9NYZ2 338 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 HIVEP1P15822 2718 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 NUDT7P0C024 238 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 PPIBP23284 216 aaKnown RBP18.81■□□□□ 0.6
HMGB3-205ENST00000455596 ACAA2P42765 397 aaKnown RBP18.81■□□□□ 0.6
HMGB3-205ENST00000455596 COPZ1P61923 177 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 SLC35A1P78382 337 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF100Q8IYN0 542 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 CADM2Q8N3J6 435 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 BBS10Q8TAM1 723 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 STON2Q8WXE9 905 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 PIGTQ969N2 578 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 PLPPR2Q96GM1 343 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 TMUB1Q9BVT8 246 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 RABEP2Q9H5N1 569 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 BCL2L10Q9HD36 194 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 SLC52A3Q9NQ40 469 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 NOSIPQ9Y314 301 aaKnown RBP18.81■□□□□ 0.6
HMGB3-205ENST00000455596 PRR14LQ5THK1 2151 aa18.81■□□□□ 0.6
HMGB3-205ENST00000455596 TEP1Q99973 2627 aaKnown RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF716A6NP11 495 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 C5orf58C9J3I9 102 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 GPR171O14626 319 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 CNOT4O95628 575 aaKnown RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 CXCR1P25024 350 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 ADAM8P78325 824 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF311Q5JNZ3 666 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 PAGE3Q5JUK9 113 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 WBP2NLQ6ICG8 309 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 ALKBH2Q6NS38 261 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 C20orf204Q6ZNR8 217 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 BHLHA15Q7RTS1 189 aaPredicted RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 MSRB3Q8IXL7 192 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 CLIP4Q8N3C7 705 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 HSD17B8Q92506 261 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 MAL2Q969L2 176 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 THOC1Q96FV9 657 aaKnown RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 PIP5K1AQ99755 562 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 NAA11Q9BSU3 229 aaPredicted RBP18.8■□□□□ 0.6
HMGB3-205ENST00000455596 SLAMF8Q9P0V8 285 aa18.8■□□□□ 0.6
HMGB3-205ENST00000455596 EIF1BO60739 113 aaKnown RBP18.79■□□□□ 0.6
HMGB3-205ENST00000455596 IMPDH2P12268 514 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 NCF2P19878 526 aaPredicted RBP18.79■□□□□ 0.6
HMGB3-205ENST00000455596 EDNRAP25101 427 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 SLC16A1P53985 500 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 H3F3AP84243 136 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF704Q6ZNC4 412 aaPredicted RBP18.79■□□□□ 0.6
HMGB3-205ENST00000455596 CCDC103Q8IW40 242 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 CCL19Q99731 98 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 POTEKPQ9BYX7 375 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 NGBQ9NPG2 151 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 VAPAQ9P0L0 249 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 CORO2BQ9UQ03 480 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 CHST2Q9Y4C5 530 aa18.79■□□□□ 0.6
HMGB3-205ENST00000455596 A0A1W2PP18 115 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 ZC3H12DA2A288 527 aaKnown RBP18.78■□□□□ 0.6
HMGB3-205ENST00000455596 EDF1O60869 148 aaKnown RBP18.78■□□□□ 0.6
HMGB3-205ENST00000455596 LYZL6O75951 148 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 SASH3O75995 380 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 PGM3O95394 542 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 ETS2P15036 469 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 IDUAP35475 653 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 TAB1Q15750 504 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 GCNT6Q5T4J0 391 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 NFKBIDQ8NI38 313 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 APH1AQ96BI3 265 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 TRIM33Q9UPN9 1127 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 GMEB1Q9Y692 573 aa18.78■□□□□ 0.6
HMGB3-205ENST00000455596 TRBV5-3A0A0A0MS03 114 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 RAMP1O60894 148 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 SMPD2O60906 423 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 ARAFP10398 606 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 PRG2P13727 222 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 COX5AP20674 150 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 IGHV1-2P23083 117 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 HOXC12P31275 282 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 NKX6-1P78426 367 aaPredicted RBP18.77■□□□□ 0.6
HMGB3-205ENST00000455596 FOXD4Q12950 439 aaPredicted RBP18.77■□□□□ 0.6
HMGB3-205ENST00000455596 CAPRIN1Q14444 709 aaKnown RBP18.77■□□□□ 0.6
HMGB3-205ENST00000455596 FBXW9Q5XUX1 488 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 PAQR6Q6TCH4 344 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 SERPINA11Q86U17 422 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 UBE2J2Q8N2K1 259 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 SLC35B4Q969S0 331 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 SIKE1Q9BRV8 207 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 TMEM204Q9BSN7 226 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 NPHS2Q9NP85 383 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.77■□□□□ 0.6
HMGB3-205ENST00000455596 DCTN4Q9UJW0 460 aa18.77■□□□□ 0.6
HMGB3-205ENST00000455596 ITPR3Q14573 2671 aa18.77■□□□□ 0.59
HMGB3-205ENST00000455596 EVPLLA8MZ36 301 aa18.76■□□□□ 0.59
HMGB3-205ENST00000455596 MRPL33O75394 65 aaKnown RBP18.76■□□□□ 0.59
HMGB3-205ENST00000455596 PLAUP00749 431 aa18.76■□□□□ 0.59
HMGB3-205ENST00000455596 GPIP06744 558 aa18.76■□□□□ 0.59
HMGB3-205ENST00000455596 GPX2P18283 190 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms