RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 KLHL24Q6TFL4 600 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CASP12Q6UXS9 341 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ZCCHC23Q6ZST2 131 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ABHD12BQ7Z5M8 362 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ADGRG3Q86Y34 549 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 NUDCD3Q8IVD9 361 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CCDC103Q8IW40 242 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CMIPQ8IY22 773 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 CLECL1Q8IZS7 167 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 C1orf162Q8NEQ5 155 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 OR8J2Q8NGG1 315 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ARL5BQ96KC2 179 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 KCNS3Q9BQ31 491 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ROPN1BQ9BZX4 212 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 SAP130Q9H0E3 1048 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ROPN1Q9HAT0 212 aaPredicted RBP11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ASIC5Q9NY37 505 aa11.68□□□□□ -0.54
HMGB3-204ENST00000448905 ANK3Q12955 4377 aaKnown RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF208O43345 1280 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 KIAA0513O60268 411 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 LMX1BO60663 402 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 SPAG7O75391 227 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 KRT33AO76009 404 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 SNUPNO95149 360 aaKnown RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 MYZAPP0CAP1 466 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 GZMKP49863 264 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 POLR2HP52434 150 aaKnown RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 TXNL4AP83876 142 aaKnown RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 MAPK14Q16539 360 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 TYW3Q6IPR3 259 aaKnown RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 TNFAIP8L2Q6P589 184 aaPredicted RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 KIRREL3Q8IZU9 778 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 CLEC4FQ8N1N0 589 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF525Q8N782 197 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 TRIML2Q8N7C3 387 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 ZNF540Q8NDQ6 660 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 RAB8BQ92930 207 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 MANSC1Q9H8J5 431 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 MTHFD2LQ9H903 347 aaPredicted RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 SLC17A5Q9NRA2 495 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 MARCOQ9UEW3 520 aaPredicted RBP11.67□□□□□ -0.54
HMGB3-204ENST00000448905 FKBP7Q9Y680 259 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 USF3Q68DE3 2245 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 PRR14LQ5THK1 2151 aa11.67□□□□□ -0.54
HMGB3-204ENST00000448905 TLN2Q9Y4G6 2542 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 TMED7-TICAM2A0A0A6YYA0 188 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 NDUFS8O00217 210 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 BPGMP07738 259 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 HNF1AP20823 631 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 MPGP29372 298 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 SLC1A3P43003 542 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 KHKP50053 298 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 PDLIM4P50479 330 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 PHC1P78364 1004 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 H3F3AP84243 136 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 GSTA3Q16772 222 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 DPY19L1Q2PZI1 675 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 TMEM225Q6GV28 225 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 EMBQ6PCB8 327 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 WDR31Q8NA23 367 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 POMGNT2Q8NAT1 580 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 FAM71CQ8NEG0 241 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 OR52E4Q8NGH9 312 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 C10orf105Q8TEF2 133 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 HTRA1Q92743 480 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 ZG16BQ96DA0 208 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 TRNT1Q96Q11 434 aaKnown RBP11.66□□□□□ -0.54
HMGB3-204ENST00000448905 OR11A1Q9GZK7 315 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 SERHL2Q9H4I8 314 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 AKTIPQ9H8T0 292 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 TMEM45AQ9NWC5 275 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 FBXO9Q9UK97 447 aaPredicted RBP11.66□□□□□ -0.54
HMGB3-204ENST00000448905 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.66□□□□□ -0.54
HMGB3-204ENST00000448905 TMED7Q9Y3B3 224 aa11.66□□□□□ -0.54
HMGB3-204ENST00000448905 CFAP73A6NFT4 308 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 GPIP06744 558 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 ITGA5P08648 1049 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 IL7RP16871 459 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 CXCR1P25024 350 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 S100A3P33764 101 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 NTF4P34130 210 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 CLNS1AP54105 237 aaKnown RBP11.65□□□□□ -0.54
HMGB3-204ENST00000448905 SNRPD2P62316 118 aaKnown RBP11.65□□□□□ -0.54
HMGB3-204ENST00000448905 SLC17A1Q14916 467 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 C9orf135Q5VTT2 229 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 SAXO2Q658L1 398 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 PAQR6Q6TCH4 344 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 OLIG3Q7RTU3 272 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 AAED1Q7RTV5 226 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 ANKRD46Q86W74 232 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 TESCQ96BS2 214 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 NEURL3Q96EH8 262 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 DNAJA3Q96EY1 480 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 SF3B5Q9BWJ5 86 aaKnown RBP11.65□□□□□ -0.54
HMGB3-204ENST00000448905 PIF1Q9H611 641 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 MOV10Q9HCE1 1003 aaKnown RBP11.65□□□□□ -0.54
HMGB3-204ENST00000448905 OBP2BQ9NPH6 170 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 SLC7A10Q9NS82 523 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 KCNS2Q9ULS6 477 aa11.65□□□□□ -0.54
HMGB3-204ENST00000448905 FLVCR1Q9Y5Y0 555 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms